Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH4g1627 | ATGTCGTCCTCCCTCTGGCTCTGTTCATCATTTCGGGCATCAGTGCTGGTGCCTCCGTTCAAAAATCTCAGATTCTTCGTTTTTCAAAACTCAATCACTCGTCGTCGTTGCTTCACACCTCGCTTCGTTGCTTCTTTGACCAATGATGATGATGATGATGATTCTCTTGCAATGCCCAAACCTAGCCAGCTGCCTTTCGATCCTTCCGTGGAGTTGTACGGGCTTGGCGTCGACCTCCAGCCAACGAATGCAGTTTCAGGCACTCCTGAACCCAGGTCCTGGTTTGGTCCAAATGGTCAGTATATAAAAGAGCTTCCGTGTCCCAGTTGCCGTGGTAGGGGTTATGCACCTTGTACCGAGTGTGGAATTGAAAGATCCCGTGCTGACTGTTCTGTTTGTTCTGGAAAGGGTGTAGTGACCTGCCATCAATGCTTAGGAGATCGTGTTATATGGGAAGAGTCCATTGATGAACGACCGTGGGAGAAAGCCCGCTCCACTTCTCCATTAAGAATGAAGGAAGATGATGAAGTTGATAACCTAGACATAAAGTTGGAAGAAAAGAAGAAATCAAAGCGTGTTTACCAATCACCAGCTCCAGAAGTTGGATTAAAGATTAGTCGATCATTGAAGAGCCTCAATGCCAAAACCGGTATGTTTAGTAAGAGAATGAAGATTATCCATCGTGACCCCACTCTTCATGCACAAAGAGTGGCTGCAATTAAGAAAGCCAAAGGAAGTGATGAAGCAAGAAAACGTGCTTCAGAAGCTCTGAAAGCATTCTTTAGTGATCCAGAAAACCGTCGAAAGAGGAGCATTGCAATGAAAGGAGTGAAATTTTACTGCAAAAATTGCGGACAAGAGGGGCATAGAAGACACTACTGTCCAAAACTTGAGAGTGACTCTATTGACAGGAAATTCAGATGTCAAGTATGTGGGGAGAAAGGCCATAACAGAAGAACCTGTAAGAAGTCTAGATTGAATAATAAAACAATCAACACAACGATGCAGTATCATTGCAGAATATGTGGGGTTAAGGGCCACAATAGGAGGACCTGTCTGAAGTCTGAATCAAACAATCCAAATAGCATACCAAGGCACTACCGTTGCGGGATTTGTCGACAAAATGGTCATAATCGTCAGAACTGTCCCAGTAAGTTGGAGCTTAATTTGATTTATATGGATAGGGTGGCTAATCGAAATAGCAGCGTGAGACTATATCATTGTAGGATCTGCCATAAAAAAGGTCATAATCGGCGGAAGTGTCCCAATGTCGATGGCAAAGGTAACCATTCAACTTCTCAAAGAGCATACACCTGCAAGCTGTGCCATGAAGAAGGGCATAATAGTAGGACATGCCATAGAAGAACTGTGAATAATCTGCAAGAAAATCCTCCAGTTGATATAATCCAATGA | 1413 | 43.74 | MSSSLWLCSSFRASVLVPPFKNLRFFVFQNSITRRRCFTPRFVASLTNDDDDDDSLAMPKPSQLPFDPSVELYGLGVDLQPTNAVSGTPEPRSWFGPNGQYIKELPCPSCRGRGYAPCTECGIERSRADCSVCSGKGVVTCHQCLGDRVIWEESIDERPWEKARSTSPLRMKEDDEVDNLDIKLEEKKKSKRVYQSPAPEVGLKISRSLKSLNAKTGMFSKRMKIIHRDPTLHAQRVAAIKKAKGSDEARKRASEALKAFFSDPENRRKRSIAMKGVKFYCKNCGQEGHRRHYCPKLESDSIDRKFRCQVCGEKGHNRRTCKKSRLNNKTINTTMQYHCRICGVKGHNRRTCLKSESNNPNSIPRHYRCGICRQNGHNRQNCPSKLELNLIYMDRVANRNSSVRLYHCRICHKKGHNRRKCPNVDGKGNHSTSQRAYTCKLCHEEGHNSRTCHRRTVNNLQENPPVDIIQ | 470 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 15229844 | 15235353 | - | evm.model.ptg000015l.1627 | HCH4g1627 | 543871 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH4g1627 | 470 | Gene3D | - | 274 | 328 | - | - | |
| HCH4g1627 | 470 | Gene3D | - | 331 | 386 | - | - | |
| HCH4g1627 | 470 | SMART | c2hcfinal6 | 307 | 323 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| HCH4g1627 | 470 | SMART | c2hcfinal6 | 368 | 384 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| HCH4g1627 | 470 | SMART | c2hcfinal6 | 407 | 423 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| HCH4g1627 | 470 | SMART | c2hcfinal6 | 280 | 296 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| HCH4g1627 | 470 | SMART | c2hcfinal6 | 438 | 454 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| HCH4g1627 | 470 | SMART | c2hcfinal6 | 338 | 354 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| HCH4g1627 | 470 | ProSiteProfiles | Zinc finger CCHC-type profile. | 307 | 323 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| HCH4g1627 | 470 | SUPERFAMILY | Retrovirus zinc finger-like domains | 278 | 325 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| HCH4g1627 | 470 | ProSiteProfiles | Zinc finger CCHC-type profile. | 281 | 296 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| HCH4g1627 | 470 | PANTHER | ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN | 368 | 454 | IPR051714 | GO:0003727(PANTHER)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0045182(PANTHER)|GO:2000767(PANTHER) | |
| HCH4g1627 | 470 | SUPERFAMILY | Retrovirus zinc finger-like domains | 398 | 456 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| HCH4g1627 | 470 | Gene3D | - | 406 | 463 | - | - |
Pathway information