Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1629 ATGTTGCGGCTACAGTTTCTTTCTTCTTCATTTCTGTCACCACTAAATCCTGAATTCTCTCCTAACTCTTCGCACCGTACGATATATAGTTTTAATCCCTCTCTCCCTCACCTAACTCTTACCACTTCACGAAAATCTTCACTAAAATCCCAATACTCTTCTTGGAATTCCAACTCCAACTCCAACTCCAACCCATCTCATATCTTTGAACCTTCTTCTCCAACTCCCACTCCCACTCCCACTCCCTCCCATTCATTTTCTCGTGCCGGAGCTCCCGGAGCATTGCCGCCGAGGTTTTTCGTCGGTCATTCGATATACAAAGGGAAAGCTGCTCTTACAGTAGAGCCTAAGCCTCCAGAGTTTACACCTTTAGATTCCGGGGCGTTTAAGTTATCCAGGGAAGGGTTTGTACTGCTTCAGTTCGCCCCTTCCGCTGCTGTTCGTCAATATGATTGGACCCGAAAACAGGTATTCTCATTATCAGTGACGGAAATAGGAAGTCTAGTTGCCCTTGGCCCGAAGGAGTCTTGTGAATTTTTTCATGACCCCTTTAAAGGGAAAAGTGAGGAAGGAAAGGTCAGAAAGATATTAAAGGTCGAACCCCTTCCAGATGGTTCCGGCCATTTCTTCAACCTCAGTGTTCAAAACAAGCTTATCAACATGGATGAGAGCATCTATATTCCCATTACTAAAGCAGAGTATGCCGTGCTTGTCTCAGCTTTTAACTTTATCCTACCATACCTTCTAGGTTGGCATGCCTTTGCGAACTCGACGAAGCCAGAAGATAACAGCAGAGTAAATAATGCCAATCCCAAATATGGAGGAGAATTTGAGTGGAGCAGATAG 846 44.8 MLRLQFLSSSFLSPLNPEFSPNSSHRTIYSFNPSLPHLTLTTSRKSSLKSQYSSWNSNSNSNSNPSHIFEPSSPTPTPTPTPSHSFSRAGAPGALPPRFFVGHSIYKGKAALTVEPKPPEFTPLDSGAFKLSREGFVLLQFAPSAAVRQYDWTRKQVFSLSVTEIGSLVALGPKESCEFFHDPFKGKSEEGKVRKILKVEPLPDGSGHFFNLSVQNKLINMDESIYIPITKAEYAVLVSAFNFILPYLLGWHAFANSTKPEDNSRVNNANPKYGGEFEWSR 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15261388 15263431 - evm.model.ptg000015l.1629 HCH4g1629 543873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1629 281 MobiDBLite consensus disorder prediction 51 88 - -
HCH4g1629 281 SUPERFAMILY ssDNA-binding transcriptional regulator domain 97 281 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH4g1629 281 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 91 265 - -
HCH4g1629 281 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 41 281 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
HCH4g1629 281 Gene3D Transcriptional Coactivator Pc4; Chain A 90 264 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH4g1629 281 MobiDBLite consensus disorder prediction 51 70 - -
HCH4g1629 281 Pfam Whirly transcription factor 105 239 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1629 K26559 - - csv:101203474 359.377
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1620 HCH-Chr12:43049349 HCH4g1629 HCH-Chr4:15261388 5.30E-43 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g1629 . 95 281 Whirly Transcription Factor Family AT1G14410 82.4 2.2e-93 339.0
HCH12g1620 . 41 234 Whirly Transcription Factor Family AT1G71260 62.1 8.0e-63 237.3
HCH4g1629 . 97 281 Whirly Transcription Factor Family AT2G02740 80.6 1.7e-90 329.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33538 PF08536 Whirly 2.80E-60 CL0609 HCH TF