Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1629 ATGTTGCGGCTACAGTTTCTTTCTTCTTCATTTCTGTCACCACTAAATCCTGAATTCTCTCCTAACTCTTCGCACCGTACGATATATAGTTTTAATCCCTCTCTCCCTCACCTAACTCTTACCACTTCACGAAAATCTTCACTAAAATCCCAATACTCTTCTTGGAATTCCAACTCCAACTCCAACTCCAACCCATCTCATATCTTTGAACCTTCTTCTCCAACTCCCACTCCCACTCCCACTCCCTCCCATTCATTTTCTCGTGCCGGAGCTCCCGGAGCATTGCCGCCGAGGTTTTTCGTCGGTCATTCGATATACAAAGGGAAAGCTGCTCTTACAGTAGAGCCTAAGCCTCCAGAGTTTACACCTTTAGATTCCGGGGCGTTTAAGTTATCCAGGGAAGGGTTTGTACTGCTTCAGTTCGCCCCTTCCGCTGCTGTTCGTCAATATGATTGGACCCGAAAACAGGTATTCTCATTATCAGTGACGGAAATAGGAAGTCTAGTTGCCCTTGGCCCGAAGGAGTCTTGTGAATTTTTTCATGACCCCTTTAAAGGGAAAAGTGAGGAAGGAAAGGTCAGAAAGATATTAAAGGTCGAACCCCTTCCAGATGGTTCCGGCCATTTCTTCAACCTCAGTGTTCAAAACAAGCTTATCAACATGGATGAGAGCATCTATATTCCCATTACTAAAGCAGAGTATGCCGTGCTTGTCTCAGCTTTTAACTTTATCCTACCATACCTTCTAGGTTGGCATGCCTTTGCGAACTCGACGAAGCCAGAAGATAACAGCAGAGTAAATAATGCCAATCCCAAATATGGAGGAGAATTTGAGTGGAGCAGATAG 846 44.8 MLRLQFLSSSFLSPLNPEFSPNSSHRTIYSFNPSLPHLTLTTSRKSSLKSQYSSWNSNSNSNSNPSHIFEPSSPTPTPTPTPSHSFSRAGAPGALPPRFFVGHSIYKGKAALTVEPKPPEFTPLDSGAFKLSREGFVLLQFAPSAAVRQYDWTRKQVFSLSVTEIGSLVALGPKESCEFFHDPFKGKSEEGKVRKILKVEPLPDGSGHFFNLSVQNKLINMDESIYIPITKAEYAVLVSAFNFILPYLLGWHAFANSTKPEDNSRVNNANPKYGGEFEWSR 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15261388 15263431 - evm.model.ptg000015l.1629 HCH4g1629 543873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1629 281 MobiDBLite consensus disorder prediction 51 88 - -
HCH4g1629 281 SUPERFAMILY ssDNA-binding transcriptional regulator domain 97 281 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH4g1629 281 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 91 265 - -
HCH4g1629 281 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 41 281 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
HCH4g1629 281 Gene3D Transcriptional Coactivator Pc4; Chain A 90 264 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH4g1629 281 MobiDBLite consensus disorder prediction 51 70 - -
HCH4g1629 281 Pfam Whirly transcription factor 105 239 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1620 HCH-Chr12:43049349 HCH4g1629 HCH-Chr4:15261388 5.30E-43 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33538 PF08536 Whirly 2.80E-60 CL0609 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1629 K26559 - csv:101203474 359.377