Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1640 ATGCTTCTTCATCATCAACCATGGCGTTTTCTTGTTTTCTTCATTTATATTATTATTCCATTTCTTCTTCCTTGCTACTCCTCTCAATCCATTTTCCCTCAAAACATTGAAACTTTCTATCCATTTTCATTCCCATTTCCCATTCAAAAATTCAACGCCACTTCTAGTAACGTAATCTCTCTTCCACATTCTCCACCGATTTCTCTTCCAAAACCAGAAGAATCCGTACAGACACTGCCACAGCAGAATCCCAAGAAAGCCATTGTTGTAACGGTAGTGATTGCCACTGTCATAGCTACCCTCTTGCTTTCTCTGTCTCTTTTCTTCATTCAAAGATCCCTTCTTGCAAAACGTAAGAAAGAACAAGAAAGTCAGTCTGTGGAGAATCAAAAAGTATTTCAAAGATTCAATGGGAATTTCAATGGTTTCATTCTTGAAGAAAATGGCTCGGATGTGATTTATTGGACTAAAGCTGCATGGAGAAAATCCAAGAAAAGTTTACTTGAAAAACTACAGAATCTCAAAAACAAAGAAGAAGAAGAAGAAGAAGAGGGAGAAGAAGAAGAAAAAGAAGGAGAAGAGGGTTTTAGGAAGGCTGATCATGGCATACAAGAAACTCCTTTGCTTCACAGAAGAGGGTCTTCTTCAACTTCTCATTTGAAAATTGGACCAGAAATTGTTGAAGCTGCTCAAATTGATCATTCTAATTCAGAGGCATTGCCATGGCTTCCTCCTCCTCCGCTACCGAGACGAAAACCGCCGCCACCTCTGCTGCCGTCAAATATTCGACGAGCATCACATGATGAGGTTAAATTGAAGCCACTTCATTGGGATAAAGTGAATACCAATAATGTAGATCATTCCATGGCTTGGGACAAGATCAATGGTGGTTCTTTCAGGTTTAATGGTGACCTTATGGAAGCTCTATTTGGATATGTAGCAACAAACAAGAAATCTCCACCAAAACTTAGATATGATGGAAGAGCACAAATCTCCATTCTGGATTCCAAGAGATCACAGAACATAGCAATAGTCCTTAAATCACTGACTTTATCTCGTCAAGAACTTCTCGATGCTCTCGTCGAAGGGCAAGGCCTCGAACCCGACATACTCGAAAAGCTTGTGAGAATTGCTCCTAACCAAGAAGAACAATCCCAAATCCTTGAATATAAAGGAGATCCATTGAAGCTAGGTGATGCAGAATCATTCATTTTCCATCTCCTCAAAGCTATTCCGACCGCTTTTACTCGTCTAAACGCCATGCTTTTCATATCAAACTACAAGTCAGAGCTTTTACATCTCATGGAATCTTCACAAACTATTGAAATGGGCTGTGTGGAGCTTCAGAAAAAGGGATTGTTCATGAAACTTTTGGAAGCAACTCTTAAAGCTGGAAACAGAATGAATTCAGGAACTACAAGAGGGAATGCACAAGCTTTCAACCTCAATTCCCTTTTGAAACTGTCAGATGTTAAAAGCAGCAATGGGAAAACTACTTTACTCCACTTTGTTGTAGAACAAGTCATCAGGTCAGAAGGGAAAAAACTCTTCTCAAACACTAGTTCAAAGGATCCGATATCGAAAAAGGAAAGAGAAACCGAGTACACGATACTCGGATTATCAGTGGTGGAATCACTCAGCTCAGAATTCTCCAATGTGAGGAAGGCAGCCACAATAGATTACAAAAACTACATCACCATCCCTCTTCTGCTATCAGGAAAAATCTCAGAAATCAGTGAAGTTGTATCAAAAGAAGGAGGAGGGGGAGAATACTACATGAAAAAGATGATGGGATTTGCGAAAACAGCTGAGGAAGAGTTGAAGATGGCAAGTAAAGAACAAAGAAGAGTAATGGAGATGGTGAAGAAAACAAATGAATATTATGAAACAGGAGATGGAAATAGAGAAAATCCATTTGGGTTATTTAGGATAGTGAAAGATTTTCTAAGGATGGTGGATGAGGTGTGCAATGAAATTGGTGGGAATTCAAGGAAGAAAAGTAAGAAGATAAATCCATGTCAACCATTAAAGAGCTCTGTAAGAATGAGATTTCCATGTTTGTCAGAACATCTAATGTGTAGTTCAAGTATTGCAAGTGAGTCTAGAGATGAAGATTTCTGA 2121 38.99 MLLHHQPWRFLVFFIYIIIPFLLPCYSSQSIFPQNIETFYPFSFPFPIQKFNATSSNVISLPHSPPISLPKPEESVQTLPQQNPKKAIVVTVVIATVIATLLLSLSLFFIQRSLLAKRKKEQESQSVENQKVFQRFNGNFNGFILEENGSDVIYWTKAAWRKSKKSLLEKLQNLKNKEEEEEEEGEEEEKEGEEGFRKADHGIQETPLLHRRGSSSTSHLKIGPEIVEAAQIDHSNSEALPWLPPPPLPRRKPPPPLLPSNIRRASHDEVKLKPLHWDKVNTNNVDHSMAWDKINGGSFRFNGDLMEALFGYVATNKKSPPKLRYDGRAQISILDSKRSQNIAIVLKSLTLSRQELLDALVEGQGLEPDILEKLVRIAPNQEEQSQILEYKGDPLKLGDAESFIFHLLKAIPTAFTRLNAMLFISNYKSELLHLMESSQTIEMGCVELQKKGLFMKLLEATLKAGNRMNSGTTRGNAQAFNLNSLLKLSDVKSSNGKTTLLHFVVEQVIRSEGKKLFSNTSSKDPISKKERETEYTILGLSVVESLSSEFSNVRKAATIDYKNYITIPLLLSGKISEISEVVSKEGGGGEYYMKKMMGFAKTAEEELKMASKEQRRVMEMVKKTNEYYETGDGNRENPFGLFRIVKDFLRMVDEVCNEIGGNSRKKSKKINPCQPLKSSVRMRFPCLSEHLMCSSSIASESRDEDF 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15566808 15569021 - evm.model.ptg000015l.1640 HCH4g1640 543884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1640 706 SUPERFAMILY Formin homology 2 domain (FH2 domain) 244 667 - -
HCH4g1640 706 Gene3D Formin, FH2 domain 260 663 IPR042201 -
HCH4g1640 706 SMART it6_source 262 667 IPR015425 -
HCH4g1640 706 Coils Coil 600 620 - -
HCH4g1640 706 FunFam Formin-like protein 269 664 - -
HCH4g1640 706 Pfam Formin Homology 2 Domain 267 652 IPR015425 -
HCH4g1640 706 MobiDBLite consensus disorder prediction 174 202 - -
HCH4g1640 706 Coils Coil 157 194 - -
HCH4g1640 706 PANTHER FORMIN-RELATED 50 675 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
HCH4g1640 706 ProSiteProfiles Formin homology-2 (FH2) domain profile. 262 678 IPR015425 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0992 HCH-Chr1:58015394 HCH4g1640 HCH-Chr4:15566808 8.50E-125 dispersed
HCH4g1640 HCH-Chr4:15566808 HCH5g0214 HCH-Chr5:1215988 1.60E-74 dispersed
HCH4g1640 HCH-Chr4:15566808 HCH12g1149 HCH-Chr12:9578757 2.60E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1640 K28090 - csv:101217450 655.21