Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1672 ATGGATTTAATAAACGGCGATAAGGCTATCGATGATGTTCCGGTAGCTAAGGATTCTAATAATCAAGTAGTGGATATCGTTTCTGATAAGTCTAGTAATAGCCAAGAGAAGGGTTTGGTTTCAAAAGTGAAGGATGTGGGAAGCATTAGTAATGATGATATGGTGTTTCGTGCTGATAAAATTGATTTCAAGAACTGGGATATTCAGCTTGATAAGCACTTGAGTCGGGCTTGGTCGAGGGATAGGGAAGCGCCGACGAGGAAGGAAGAATGGGAGATCGATTTGTCTAAGTTGGATATAAGATATGTTAAAGCTCATGGAACTTATGGTACTATATACAGAGGAAATTATGATGGCAATGATGTTGCAGTAAAAGTGCTCGATTGGGGGGACGATGGTGTTGCCTCAGCTTCTGAAATTGCTGCTCTTCGGTCATCATTTCGCCAGGAAGTCGCCGTTTGGCATAAGCTCGACCATCCCAATGTTGCAAAGTTTTTTGGAGCATCAATGGGAACATCCAACCTTAAAATCCCTCCCACAAGTGACAATCATCAATCTTTTCCTTCAAGGGCTTGTTGCGTTGTTGTCGAGTATCTTCCAGGTGGAACACTGAAGAACTTTTTAATCAGAAATAGGAAAAAGAAACTTGCATTTAAGGTTGTAATTCAACTTGCTTTGGATCTTTCTAGAGGTTTGAGTTATCTACACTCAAAAAAGATAGTACACCGTGACATTAAAACAGAGAATGTGCTACTAGATGCTCAAAAGACTCTGAAAATTGTTGATTTTGGTGTTGCTCGAGTTGAAGCTCAAAACCCAAGGGATATGACTGGAGAGACCGGCACCCTCGGTTACATGGCGCCAGAGGTTCTTGATGGTAAACCGTATAATCGGAGATGTGATGTCTACAGCTTTGGTATATGTTTATGGGAAACTTATTGCTGTGACATGCCCTATCCTGATCTTAGTTTTGCTGAAGTTTCATCCGCCGTCGTGCGTCAGAACTTACGACCAGACATCCCACGATGTTGCCCAAGTTCATTAGCAAACATTATGAGAAGATGTTGGGACGCAAATCCGGAGAAACGACCTGACATGGATGAGGTTGTAAATTTGTTGGAAGCCATTGATACAAGCAAGGGAGGAGGCATGATACCTGATGATCAAGTATCAGGCTGTTTTTGTTTCGGCGTGTCTCGTGGTCCATAG 1209 42.27 MDLINGDKAIDDVPVAKDSNNQVVDIVSDKSSNSQEKGLVSKVKDVGSISNDDMVFRADKIDFKNWDIQLDKHLSRAWSRDREAPTRKEEWEIDLSKLDIRYVKAHGTYGTIYRGNYDGNDVAVKVLDWGDDGVASASEIAALRSSFRQEVAVWHKLDHPNVAKFFGASMGTSNLKIPPTSDNHQSFPSRACCVVVEYLPGGTLKNFLIRNRKKKLAFKVVIQLALDLSRGLSYLHSKKIVHRDIKTENVLLDAQKTLKIVDFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWETYCCDMPYPDLSFAEVSSAVVRQNLRPDIPRCCPSSLANIMRRCWDANPEKRPDMDEVVNLLEAIDTSKGGGMIPDDQVSGCFCFGVSRGP 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17576049 17579070 - evm.model.ptg000015l.1672 HCH4g1672 543916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1672 402 SMART serkin_6 98 376 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1672 402 FunFam Serine/threonine-protein kinase HT1 199 384 - -
HCH4g1672 402 Gene3D Phosphorylase Kinase; domain 1 86 178 - -
HCH4g1672 402 CDD STKc_MAP3K-like 105 373 - -
HCH4g1672 402 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 62 374 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
HCH4g1672 402 Gene3D Transferase(Phosphotransferase) domain 1 199 384 - -
HCH4g1672 402 SUPERFAMILY Protein kinase-like (PK-like) 80 373 IPR011009 -
HCH4g1672 402 Pfam Protein tyrosine and serine/threonine kinase 106 372 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1672 402 ProSiteProfiles Protein kinase domain profile. 98 376 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1672 402 PRINTS Tyrosine kinase catalytic domain signature 300 322 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1672 402 PRINTS Tyrosine kinase catalytic domain signature 344 366 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1672 402 PRINTS Tyrosine kinase catalytic domain signature 234 252 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1672 402 PRINTS Tyrosine kinase catalytic domain signature 196 209 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1672 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1672 402 FunFam Kinase suppressor of Ras 1 87 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1672 HCH-Chr4:17576049 HCH7g1242 HCH-Chr7:45244153 1.10E-181 dispersed
HCH4g1672 HCH-Chr4:17576049 HCH9g0151 HCH-Chr9:875802 1.90E-149 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81490 PF07714 PK_Tyr_Ser-Thr 3.90E-58 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1672 - - - 0.0