Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1677 ATGGGTAACGCCGACTACGTATACCCGTCGACAACAGCGGGAGCGATGGCGAACGGCGATTGTTCACATCGTGTTGCGATACCCCCGCCGCAGCCGTTTTTCAAGTCCCTTAAAAACTCTCTCAAAGAAACATTCTTCCCTGATGACCCACTTAGACAATTCAAGAACCAACCAACGTCGAGAAAGGTTGCGTTGGGGCTTCAGTACTTCTTTCCCATTATGGAATGGGCTCCTCGTTACACGTTCAAGTTCTTGAAATCTGATCTTATCTCGGGCATCACCATTGCTAGCCTTGCTATTCCTCAGGGAATCAGCTACGCCAAGCTCGCTAACTTGCCTCCCATTCTTGGCCTTTATTCAAGCTTTATTCCACCATTGATTTACGCAATGATGGGAAGCTCGAGGGATTTGGCAGTGGGGACGGTGGCAGTTGCGTCGCTGCTCATTAGTTCGATGTTGGGGGCAGAGGTTAATGCTGTTGATAGTCCAAAGCTTTACCTTCACCTTGCTTTCACTGCTACTTTTTTTGCTGGTGTTTTCCAGGCTTCTTTGGGTCTCTTGAGGCTAGGGTTTATCGTGGACTTTCTGTCACATGCAACGATAGTGGGATTCATGGGAGGAGCAGCCACGGTTGTTTGCTTGCAGCAGCTTAAAGGAATCCTCGGTCTTCAACATTTCACCCATGGAACCGACCTTGTTTCTGTCCTTCGTTCTGTCTTCACTCAAGTTCATCAGTGGAGATGGGAAAGTGGAGTTTTGGGATGTGGTTTCCTTTTCTTCCTCCTCATCACTAGATACTTTAGCAAGAAGAAGCCAAAGTTGTTTTGGATATCCGCAATGGCGCCTTTGACGTCTGTGATTCTTGGAAGCCTCCTTGTTTTTCTCACGCATGCTGAAAAACACGGCGTTGAAGTGATTGGAAACTTGAAGAAAGGGCTAAATCCAGTCTCCATCACAGATCTGGTGTTTGTGTCTCCATATCTGAGCACTGCTATTAAAACAGGCATCGTCACTGGTGTTATAGCTCTTGCGGAAGGAATAGCGGTTGGGAGAAGCTTCGCGATGTTCAAGCATTATAATATTGATGGTAACAAAGAGATGGTGGCCATTGGGACCATGAATATGGTTGGCTCTTGCTTCTCTTGCTATCTCACCACAGGGCCATTTTCGCGGTCGGCTGTGAACTACAATGCCGGATGCAAGACAGCAGTATCAAACGTAGTAATGGCAATCGCTGTCATGTTAACGTTATTGTTCTTGACACCATTGTTCCATTACACTCCTCTTGTTGTTCTTTCCTCCATTATCATTTCAGCCATGCTCGGTCTCATTGACTATGACGCTGCCATTCATCTCTGGAAAGTCGACAAGTTCGATTTCCTTGTCTGCATTGCCGCTTATTCCGGCGTCGTTTTCGCCAGTGTCGAAATCGGCTTGGTCATTGCGGTTGCTATATCGGTGCTTAGAGTGCTTTTGTTCGTCGCAAGGCCAAGAACACTTGTGCTCGGAAACCTTCCCAATTCCACTATTTATAGGAATGTTGAGCAATACCCAAATGCCGATAATGTTCCAGGCGTTCTCATTCTTGAGATTGACGCTCCCATTTACTTTGCCAATTCCAGCTACTTGAGAGAAAGGATTATAAGATGGGTTGATGAAGAGGAAGACAGGATAAAAGCGTCAGGAGAAAGTACCTTACAATATGTGCTATTGGATATGAGTGCTATTGCAAACATTGATACAAGCGGAATAAGCATGTTTGAAGAGGTTAAACAGATTTTAGAGAGACGGGGATTGAAGATGGTTTTGGCCAACCCTAGTGCTGAGGTCATGAAGAAGCTCGACAAGGCCAAGTTCATCGAGAACATAGGGCAAGAATGGATTTATCTTACGGTTGGTGAAGCTGTAGCAGCATGCAACTATATGCTTCACTCGTGCAATCCAAATCCTTTGAAGGTTGAATCTACAGAGCCATGGAACAATGTCTAA 1989 45.8 MGNADYVYPSTTAGAMANGDCSHRVAIPPPQPFFKSLKNSLKETFFPDDPLRQFKNQPTSRKVALGLQYFFPIMEWAPRYTFKFLKSDLISGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSRDLAVGTVAVASLLISSMLGAEVNAVDSPKLYLHLAFTATFFAGVFQASLGLLRLGFIVDFLSHATIVGFMGGAATVVCLQQLKGILGLQHFTHGTDLVSVLRSVFTQVHQWRWESGVLGCGFLFFLLITRYFSKKKPKLFWISAMAPLTSVILGSLLVFLTHAEKHGVEVIGNLKKGLNPVSITDLVFVSPYLSTAIKTGIVTGVIALAEGIAVGRSFAMFKHYNIDGNKEMVAIGTMNMVGSCFSCYLTTGPFSRSAVNYNAGCKTAVSNVVMAIAVMLTLLFLTPLFHYTPLVVLSSIIISAMLGLIDYDAAIHLWKVDKFDFLVCIAAYSGVVFASVEIGLVIAVAISVLRVLLFVARPRTLVLGNLPNSTIYRNVEQYPNADNVPGVLILEIDAPIYFANSSYLRERIIRWVDEEEDRIKASGESTLQYVLLDMSAIANIDTSGISMFEEVKQILERRGLKMVLANPSAEVMKKLDKAKFIENIGQEWIYLTVGEAVAACNYMLHSCNPNPLKVESTEPWNNV 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18000567 18031622 - evm.model.ptg000015l.1677 HCH4g1677 543921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1677 662 Gene3D STAS domain 496 642 IPR036513 -
HCH4g1677 662 Pfam STAS domain 517 635 IPR002645 -
HCH4g1677 662 ProSiteProfiles STAS domain profile. 516 639 IPR002645 -
HCH4g1677 662 ProSitePatterns SLC26A transporters signature. 114 135 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
HCH4g1677 662 PANTHER SULFATE TRANSPORTER 40 640 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g1677 662 FunFam Sulfate transporter 31 496 642 - -
HCH4g1677 662 CDD STAS_SulP_like_sulfate_transporter 517 632 - -
HCH4g1677 662 NCBIfam sulfate permease 72 635 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g1677 662 Pfam Sulfate permease family 85 466 IPR011547 GO:0016020(InterPro)
HCH4g1677 662 SUPERFAMILY SpoIIaa-like 521 640 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0445 HCH-Chr13:3082178 HCH4g1677 HCH-Chr4:18000567 5.90E-106 dispersed
HCH1g0037 HCH-Chr1:2625862 HCH4g1677 HCH-Chr4:18000567 6.70E-205 dispersed
HCH4g1677 HCH-Chr4:18000567 HCH7g1247 HCH-Chr7:45318031 4.30E-292 dispersed
HCH4g1677 HCH-Chr4:18000567 HCH4g1371 HCH-Chr4:10035240 1.10E-210 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1677 K17471 - csv:101222260 1164.44