Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH4g1702 | ATGGACGTAGTGGAAATGGATAATCCAACGAGTCCTATCAAGGCCTTAGCTTCATTTCTCATCCGCCGCCACTCCGATCAGCTCCATTCAATTTCCCTCTCCCCTGACCCTAAACTCCATTACCCTCTCTTCGTAGAATTCGCAGAGCTGATGGACGACGATCCGTCTCTTTCTCGTTTCGTCTTCTCCCATCCAACTGAGTATTTGCGTTTTTTCGACGATGCAGCTCTTTGGGCTCATAAAATCATATTGGGTGACTCCAAAGGTTGCGTTAATGGAATTAAGAAAGATTTCATTCATGTTCGGATTAATATCAGCGGCTCTCCATTGGAATGGGCTGAGACTTTTCCTAGCATTGGATCTGTGAGAGTGAAGCATCGAGGAGTACTTCTCACACTTAAAGGAACGGTAATCAGATCCGGAGCTATTAAGATGTATGAGGGAGAGAGGTGGTACTTCTGCCGGAAATGCAAGCACAAGTTCCCAGTTTATCCAGAGCTAGAAACTAGAAACTCCCTCCCATTGCCTTCATTTTGCCCCTCTCAGAGGGCAAAGCGATGTGAAGGTAAAAGTTTCGAGTGTTTGGAAGGTTCTGTAGCTCGCCATGATTACCAAGAGATAAAAATTCAGGAGAACACGCAACTATTGGGTGTGGGATCCATTCCTCGCTCCATTCTAGTTGTTCTCAAGGATGACCTCGTTGACCTTGTTAAAGCTGGAGATGATGTAATTGTTACAGGAATTTTAAGTGCAAAGTGGTCTCCAGACCTCAAAGATGTGAGGTGTGACCTTGATCCCATGCTAGTTGCTAATCATGTGAGAAGAACCAATGAACTGAAAGCTGAGATCGGGATCCCTGATGATATCACTATGAAATTTAAGCACTTCTGGTCAGATTTCCAAGATACTCCTTTAAAAGGGAGAAACGCTATTCTAAGAGGTATATGCCCTCAGGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCATTGGAGGTGTGCAACATGTGGATGTATCTGGGACTAAAGTACGAGGAGAATCTCATTTATTATTGGTTGGGGATCCAGGTACTGGAAAGTCACAGTTCTTGAAATTTGCTGCCAAATTGAGTAATCGAGCTGTTATTACCACTGGATTAGGAAGCACTAGTGCTGGACTGACTGTTGCTGCTGTCAAGGACGGAGGGGAATGGATGCTGGAAGCTGGGGCACTTGTCCTGGCAGATGGAGGGCTTTGTTGCATAGATGAAGTGGACAGCATGAGAGAACATGATAGAGCCACCATCCATGAAGCAATGGAGCAACAGACTATAAGTGTTGCAAAGGCAGGGCTGGTAACAACTCTCAGTACTAGAACAATCGTATTTGGCGCAACTAATCCTAAAGGACAATATGATCCTGAACAACGTATCTTTTTCAGCTG | 1433 | 44.52 | MDVVEMDNPTSPIKALASFLIRRHSDQLHSISLSPDPKLHYPLFVEFAELMDDDPSLSRFVFSHPTEYLRFFDDAALWAHKIILGDSKGCVNGIKKDFIHVRINISGSPLEWAETFPSIGSVRVKHRGVLLTLKGTVIRSGAIKMYEGERWYFCRKCKHKFPVYPELETRNSLPLPSFCPSQRAKRCEGKSFECLEGSVARHDYQEIKIQENTQLLGVGSIPRSILVVLKDDLVDLVKAGDDVIVTGILSAKWSPDLKDVRCDLDPMLVANHVRRTNELKAEIGIPDDITMKFKHFWSDFQDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDVSGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGQYDPEQRIFFS | 477 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 19954653 | 20015150 | - | evm.model.ptg000015l.1702 | HCH4g1702 | 543946 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH4g1702 | 477 | ProSiteProfiles | MCM family domain profile. | 307 | 464 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH4g1702 | 477 | SUPERFAMILY | Nucleic acid-binding proteins | 40 | 258 | IPR012340 | - | |
| HCH4g1702 | 477 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 457 | 469 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH4g1702 | 477 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 434 | 447 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH4g1702 | 477 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 406 | 420 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH4g1702 | 477 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 348 | 363 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH4g1702 | 477 | Pfam | MCM P-loop domain | 309 | 473 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH4g1702 | 477 | Gene3D | - | 295 | 475 | IPR027417 | - | |
| HCH4g1702 | 477 | SMART | mcm | 115 | 476 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH4g1702 | 477 | Gene3D | - | 121 | 251 | IPR012340 | - | |
| HCH4g1702 | 477 | Gene3D | - | 146 | 202 | - | - | |
| HCH4g1702 | 477 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 12 | 473 | IPR031327 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER) | |
| HCH4g1702 | 477 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 317 | 470 | IPR027417 | - | |
| HCH4g1702 | 477 | Pfam | MCM OB domain | 121 | 251 | IPR033762 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH4g1702 | HCH-Chr4:19954653 | HCH5g1143 | HCH-Chr5:38089525 | 1.30E-51 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH4g1702 | K10738 | - | csv:101205171 | 851.277 |