Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1702 ATGGACGTAGTGGAAATGGATAATCCAACGAGTCCTATCAAGGCCTTAGCTTCATTTCTCATCCGCCGCCACTCCGATCAGCTCCATTCAATTTCCCTCTCCCCTGACCCTAAACTCCATTACCCTCTCTTCGTAGAATTCGCAGAGCTGATGGACGACGATCCGTCTCTTTCTCGTTTCGTCTTCTCCCATCCAACTGAGTATTTGCGTTTTTTCGACGATGCAGCTCTTTGGGCTCATAAAATCATATTGGGTGACTCCAAAGGTTGCGTTAATGGAATTAAGAAAGATTTCATTCATGTTCGGATTAATATCAGCGGCTCTCCATTGGAATGGGCTGAGACTTTTCCTAGCATTGGATCTGTGAGAGTGAAGCATCGAGGAGTACTTCTCACACTTAAAGGAACGGTAATCAGATCCGGAGCTATTAAGATGTATGAGGGAGAGAGGTGGTACTTCTGCCGGAAATGCAAGCACAAGTTCCCAGTTTATCCAGAGCTAGAAACTAGAAACTCCCTCCCATTGCCTTCATTTTGCCCCTCTCAGAGGGCAAAGCGATGTGAAGGTAAAAGTTTCGAGTGTTTGGAAGGTTCTGTAGCTCGCCATGATTACCAAGAGATAAAAATTCAGGAGAACACGCAACTATTGGGTGTGGGATCCATTCCTCGCTCCATTCTAGTTGTTCTCAAGGATGACCTCGTTGACCTTGTTAAAGCTGGAGATGATGTAATTGTTACAGGAATTTTAAGTGCAAAGTGGTCTCCAGACCTCAAAGATGTGAGGTGTGACCTTGATCCCATGCTAGTTGCTAATCATGTGAGAAGAACCAATGAACTGAAAGCTGAGATCGGGATCCCTGATGATATCACTATGAAATTTAAGCACTTCTGGTCAGATTTCCAAGATACTCCTTTAAAAGGGAGAAACGCTATTCTAAGAGGTATATGCCCTCAGGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCATTGGAGGTGTGCAACATGTGGATGTATCTGGGACTAAAGTACGAGGAGAATCTCATTTATTATTGGTTGGGGATCCAGGTACTGGAAAGTCACAGTTCTTGAAATTTGCTGCCAAATTGAGTAATCGAGCTGTTATTACCACTGGATTAGGAAGCACTAGTGCTGGACTGACTGTTGCTGCTGTCAAGGACGGAGGGGAATGGATGCTGGAAGCTGGGGCACTTGTCCTGGCAGATGGAGGGCTTTGTTGCATAGATGAAGTGGACAGCATGAGAGAACATGATAGAGCCACCATCCATGAAGCAATGGAGCAACAGACTATAAGTGTTGCAAAGGCAGGGCTGGTAACAACTCTCAGTACTAGAACAATCGTATTTGGCGCAACTAATCCTAAAGGACAATATGATCCTGAACAACGTATCTTTTTCAGCTG 1433 44.52 MDVVEMDNPTSPIKALASFLIRRHSDQLHSISLSPDPKLHYPLFVEFAELMDDDPSLSRFVFSHPTEYLRFFDDAALWAHKIILGDSKGCVNGIKKDFIHVRINISGSPLEWAETFPSIGSVRVKHRGVLLTLKGTVIRSGAIKMYEGERWYFCRKCKHKFPVYPELETRNSLPLPSFCPSQRAKRCEGKSFECLEGSVARHDYQEIKIQENTQLLGVGSIPRSILVVLKDDLVDLVKAGDDVIVTGILSAKWSPDLKDVRCDLDPMLVANHVRRTNELKAEIGIPDDITMKFKHFWSDFQDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDVSGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGQYDPEQRIFFS 477
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 19954653 20015150 - evm.model.ptg000015l.1702 HCH4g1702 543946
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1702 477 ProSiteProfiles MCM family domain profile. 307 464 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH4g1702 477 SUPERFAMILY Nucleic acid-binding proteins 40 258 IPR012340 -
HCH4g1702 477 PRINTS Mini-chromosome maintenance (MCM) protein family signature 457 469 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH4g1702 477 PRINTS Mini-chromosome maintenance (MCM) protein family signature 434 447 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH4g1702 477 PRINTS Mini-chromosome maintenance (MCM) protein family signature 406 420 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH4g1702 477 PRINTS Mini-chromosome maintenance (MCM) protein family signature 348 363 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH4g1702 477 Pfam MCM P-loop domain 309 473 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH4g1702 477 Gene3D - 295 475 IPR027417 -
HCH4g1702 477 SMART mcm 115 476 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
HCH4g1702 477 Gene3D - 121 251 IPR012340 -
HCH4g1702 477 Gene3D - 146 202 - -
HCH4g1702 477 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 12 473 IPR031327 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)
HCH4g1702 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 470 IPR027417 -
HCH4g1702 477 Pfam MCM OB domain 121 251 IPR033762 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1702 HCH-Chr4:19954653 HCH5g1143 HCH-Chr5:38089525 1.30E-51 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1702 K10738 - csv:101205171 851.277