Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1713 ATGGCTTCAGTCGGTGCTCCACAAAAAGAATTAAACATTAATCATGTGGCAGTTTCAATCCATGCAGATATTGCTGAGACTGACAGTATTGTCGATTACTCTGAAAGAGCTCAGTGGCTTCGAGCAGCAGTTTTGGGAGCAAATGATGGGTTGGTTACTGTTGCATCGTTAATGATGGGTGTGGGATCTGTGAAGGCTGATGCAAAAGCCATGCTGCTTGCAGGCTTTGCAGGACTAATCGCAGGAGCATGCAGTATGGCAATAGGAGAGTATGTGTCTGTGTATACTCAATATGAGATAGAGAAAGCTCAGATGAAGAGACAAGACAGCAGTGAGAAAGTGAAGCTGCCGAGTCCATTGCAGGCTGCGGTAGCTTCAGCGGTAGCGTTCTCGATTGGGGCAGTGGTGCCTTTGCTTGCAGCAGCTTTTATTAGTGACCATAAAATCAGGCTTGGTGTTGTAGCAGCAGCAGCTAGTTTGACACTGGTTGTATTTGGAGGAGTAGGAGCTATCTTAGGAAAAACTCCAGTGGGGAGATCGTGTGCTAGAGTTCTTGTTGGAGGGTGGATGGCTATGGCCATTACTTTTGGGCTTACCAAGTTAATTGGCTCCAGGGGACTCTGA 624 46.96 MASVGAPQKELNINHVAVSIHADIAETDSIVDYSERAQWLRAAVLGANDGLVTVASLMMGVGSVKADAKAMLLAGFAGLIAGACSMAIGEYVSVYTQYEIEKAQMKRQDSSEKVKLPSPLQAAVASAVAFSIGAVVPLLAAAFISDHKIRLGVVAAAASLTLVVFGGVGAILGKTPVGRSCARVLVGGWMAMAITFGLTKLIGSRGL 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20952363 20952986 + evm.model.ptg000015l.1713 HCH4g1713 543957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1713 207 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 25 203 IPR008217 GO:0005381(PANTHER)|GO:0005384(InterPro)|GO:0005384(PANTHER)|GO:0006880(PANTHER)|GO:0016020(PANTHER)|GO:0030026(InterPro)|GO:0030026(PANTHER)
HCH4g1713 207 Pfam VIT family 40 109 IPR008217 GO:0005384(InterPro)|GO:0030026(InterPro)
HCH4g1713 207 Pfam VIT family 116 199 IPR008217 GO:0005384(InterPro)|GO:0030026(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1440 HCH-Chr12:38819917 HCH4g1713 HCH-Chr4:20952363 9.20E-61 dispersed
HCH4g1713 HCH-Chr4:20952363 HCH13g0228 HCH-Chr13:1507423 1.70E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1713 K22736 - gmx:100790996 275.404