Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1759 ATGGATCAATCGGAGCGCGCACAGCATCAACATCAGCAGCCTGCAGGGGGTGTTGTTGGTGCAGGCCAATTAGCATATTCTAATCCTTACCCAACAGCACCAATGGTGGCTTCAGGAAGCCCTGCTACTACTGTTCCCTCGACTCAGCCACCGTCGAGTTTCTCGAATTCTCCACACCAGCTTGCCTATCAGCAGGCCCAACACTTCCACCACCAGCAGCAACAGCAACAACAGCAGCAGCTCCAAATGTTTTGGGCCAACCAAATGCAAGAAATTGAGCAGACCACCGACTTCAAGAATCACAGTCTACCCCTTGCTCGGATTAAGAAAATTATGAAGGCTGATGAAGATGTCAGAATGATTTCAGCTGAAGCACCTGTTATATTTGCAAAGGCGTGTGAGATGTTCATCTTGGAGTTGACTCTGCGCTCTTGGATTCATACAGAAGAGAATAAAAGGAGAACTTTACAGAAGAATGATATTGCGGCTGCAATTTCAAGGACTGATGTCTTTGATTTCTTGGTCGATATTATTCCTAGAGACGAGTTGAAAGAGGAAGGACTCGGAGTCACTAAAGCTTCGATTCCTGTAGTGGGTTCCCCTGCTGATCTTCCTTATTATTATGTTCCATCACAGCATTCTCCGGTAGGAGCTACAGGGATGATCATGGGAAAGCAATTAGATCAAGCAAATATGTACGGTTCCACCCAACAGCCTCGACCACCAATGGCTTTTATGCCGTGGCCGCATACGCAACCTCAGCAGCAGCAACAGAGCCATCAGCAGCAAAGTGACGCATAG 801 47.44 MDQSERAQHQHQQPAGGVVGAGQLAYSNPYPTAPMVASGSPATTVPSTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKASIPVVGSPADLPYYYVPSQHSPVGATGMIMGKQLDQANMYGSTQQPRPPMAFMPWPHTQPQQQQQSHQQQSDA 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30658108 30658908 + evm.model.ptg000015l.1759 HCH4g1759 544003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1759 266 Gene3D Histone, subunit A 63 180 IPR009072 GO:0046982(InterPro)
HCH4g1759 266 MobiDBLite consensus disorder prediction 33 75 - -
HCH4g1759 266 MobiDBLite consensus disorder prediction 1 75 - -
HCH4g1759 266 FunFam Nuclear transcription factor Y subunit gamma 68 180 - -
HCH4g1759 266 MobiDBLite consensus disorder prediction 249 266 - -
HCH4g1759 266 SUPERFAMILY Histone-fold 58 174 IPR009072 GO:0046982(InterPro)
HCH4g1759 266 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 82 254 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
HCH4g1759 266 Pfam Core histone H2A/H2B/H3/H4 55 165 IPR007125 GO:0003677(InterPro)
HCH4g1759 266 MobiDBLite consensus disorder prediction 232 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1759 HCH-Chr4:30658108 HCH8g0128 HCH-Chr8:5282909 1.60E-67 dispersed
HCH4g1759 HCH-Chr4:30658108 HCH3g0451 HCH-Chr3:2867793 2.40E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33546 PF00125 Histone 3.40E-18 CL0012 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1759 K08066 - csv:101213813 396.741