Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1759 ATGGATCAATCGGAGCGCGCACAGCATCAACATCAGCAGCCTGCAGGGGGTGTTGTTGGTGCAGGCCAATTAGCATATTCTAATCCTTACCCAACAGCACCAATGGTGGCTTCAGGAAGCCCTGCTACTACTGTTCCCTCGACTCAGCCACCGTCGAGTTTCTCGAATTCTCCACACCAGCTTGCCTATCAGCAGGCCCAACACTTCCACCACCAGCAGCAACAGCAACAACAGCAGCAGCTCCAAATGTTTTGGGCCAACCAAATGCAAGAAATTGAGCAGACCACCGACTTCAAGAATCACAGTCTACCCCTTGCTCGGATTAAGAAAATTATGAAGGCTGATGAAGATGTCAGAATGATTTCAGCTGAAGCACCTGTTATATTTGCAAAGGCGTGTGAGATGTTCATCTTGGAGTTGACTCTGCGCTCTTGGATTCATACAGAAGAGAATAAAAGGAGAACTTTACAGAAGAATGATATTGCGGCTGCAATTTCAAGGACTGATGTCTTTGATTTCTTGGTCGATATTATTCCTAGAGACGAGTTGAAAGAGGAAGGACTCGGAGTCACTAAAGCTTCGATTCCTGTAGTGGGTTCCCCTGCTGATCTTCCTTATTATTATGTTCCATCACAGCATTCTCCGGTAGGAGCTACAGGGATGATCATGGGAAAGCAATTAGATCAAGCAAATATGTACGGTTCCACCCAACAGCCTCGACCACCAATGGCTTTTATGCCGTGGCCGCATACGCAACCTCAGCAGCAGCAACAGAGCCATCAGCAGCAAAGTGACGCATAG 801 47.44 MDQSERAQHQHQQPAGGVVGAGQLAYSNPYPTAPMVASGSPATTVPSTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKASIPVVGSPADLPYYYVPSQHSPVGATGMIMGKQLDQANMYGSTQQPRPPMAFMPWPHTQPQQQQQSHQQQSDA 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30658108 30658908 + evm.model.ptg000015l.1759 HCH4g1759 544003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1759 266 Gene3D Histone, subunit A 63 180 IPR009072 GO:0046982(InterPro)
HCH4g1759 266 MobiDBLite consensus disorder prediction 33 75 - -
HCH4g1759 266 MobiDBLite consensus disorder prediction 1 75 - -
HCH4g1759 266 FunFam Nuclear transcription factor Y subunit gamma 68 180 - -
HCH4g1759 266 MobiDBLite consensus disorder prediction 249 266 - -
HCH4g1759 266 SUPERFAMILY Histone-fold 58 174 IPR009072 GO:0046982(InterPro)
HCH4g1759 266 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 82 254 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
HCH4g1759 266 Pfam Core histone H2A/H2B/H3/H4 55 165 IPR007125 GO:0003677(InterPro)
HCH4g1759 266 MobiDBLite consensus disorder prediction 232 266 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1759 K08066 - - csv:101213813 396.741
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1759 HCH-Chr4:30658108 HCH8g0128 HCH-Chr8:5282909 1.60E-67 dispersed
HCH4g1759 HCH-Chr4:30658108 HCH3g0451 HCH-Chr3:2867793 2.40E-52 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g1484 . 35 213 CCAAT-HAP5 Transcription Factor Family AT3G48590 87.9 4.3e-85 311.2
HCH3g0451 . 39 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 85.2 6.2e-84 307.4
HCH4g1759 . 81 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.0 1.1e-51 200.3
HCH8g0128 . 82 240 CCAAT-HAP5 Transcription Factor Family AT3G48590 66.3 1.2e-50 196.8
HCH8g0128 . 16 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 54.8 7.0e-56 214.2
HCH4g1759 . 27 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 51.7 2.4e-48 189.1
HCH8g1484 . 5 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 5.2e-43 171.4
HCH3g0451 . 38 137 CCAAT-HAP5 Transcription Factor Family AT1G08970 81.0 5.8e-42 167.9
HCH8g0128 . 16 249 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.4 1.5e-63 239.6
HCH4g1759 . 81 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 71.5 4.0e-53 204.9
HCH8g1484 . 34 190 CCAAT-HAP5 Transcription Factor Family AT1G54830 65.6 1.1e-50 196.8
HCH3g0451 . 38 195 CCAAT-HAP5 Transcription Factor Family AT1G54830 64.6 2.4e-50 195.7
HCH8g1484 . 34 189 CCAAT-HAP5 Transcription Factor Family AT5G50480 55.3 9.9e-38 153.7
HCH3g0451 . 38 194 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.1 2.2e-37 152.5
HCH3g0451 . 39 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 79.6 6.0e-77 284.3
HCH8g1484 . 35 213 CCAAT-HAP5 Transcription Factor Family AT5G63470 78.2 2.3e-76 282.3
HCH4g1759 . 81 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.5 2.6e-48 189.1
HCH8g0128 . 82 240 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.4 3.4e-48 188.7
HCH4g1759 . 50 212 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.1 2.7e-64 241.9
HCH3g0451 . 39 163 CCAAT-HAP5 Transcription Factor Family AT1G56170 73.0 1.4e-49 193.0
HCH8g1484 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 73.0 1.9e-49 192.6
HCH8g0128 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 61.5 9.4e-49 190.3
HCH1g0595 . 1 279 CCAAT-HAP5 Transcription Factor Family AT3G12480 53.9 4.1e-61 231.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33546 PF00125 Histone 3.40E-18 CL0012 HCH TF