Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1774 ATGGATAACATAACAGCTCAATTGAAAAGAGGAATATCACGTCAATTCTCAACAGGATCATTACAACGAAATTTAAGTAGACAATTCACGAGACAATCATCTCTAGACCCGAGACGGAATAATTTGAGATTCAGTTTCGGAAGGCAATCGTCACTTGATCCAATAAGAAGATGTCCTGGTGAAGATAATGAATTAACGGTGCCGGAGAATCTTGATTCAACGATGCAATTATTATTCATGGCGTGTCGTGGAGATGTGATGGGAGTTGAAGATTTGTTAAATGAAGGAATTGATGTTAATAGTATTGATTTGGATGGACGTACGGCGTTACATATTGCTGGATGTGAAGGACATGCTGAGGTTGTTAAGCTTTTACTTAGTCGTAAAGCTAATATTGATGCTCGTGATCGCTGGGGGAGTACGGCAGCTGCAGATGCAAAATACTATGGAAATACTGAAATCTACAACATTCTGAAGGCACGTGGAGCAAAAGTTCCGAAATTAAGGAAGACACCAATGACGGTGGCAAATCCTAGAGAAGTTCCAGAGTATGAGCTTAATCCATTGGAGCTTCAGATTCGGAGGAGTGATGGTATCTCAAAGGGGACATATCAAGTTGCCAAATGGAATGGTACAAAAGTTGCTGTCAAAATTCTTGATAAAGATTGCTATTGTAACCCTGATTCTATAAATGCATTCAAACATGAGTTGACATTATTGGAAAAGGTCCGACATCCAAATGTGGTTCAGTTTGTTGGAGCTGTTACCCAAAATTTGCCCATGATGATTGTTTCAGAATATCATCCAAAGGGTGATTTAAGCTGCTATCTTCAGAAGAAAGGGCGCCTGTCTCCATCTAAAGCTCTAAGATTTGGCCTTGATATTGCTAGGGGAATGAACTATCTTCACGAATGCAAACCAGATCCGGTTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAGTGGTGGGCAATTGAAGGTTTCTGGATTTGGCTTGATAAGGTTGTCAAAAACTTCCCCTGACAAAGCAAAACTAGCTCAGCCAGTGGTTACTGACTTTTCAAACTTGTATTTGGCCCCTGAGGTTTACAAGGATGAAATATTTGACAGAAGTGTCGATGCATTTTCTTTCGGTCTCATTTTATACGAGATGATTGAGGGTATTCAACCTTTCCATCCCAAGACTCCAGAAGAGGTTGCCAAAGCTATTTGTCTAGAAGGAAAGAGACCTCCGTTTAAGATCAAATCAAAAAGTTATCCACCTGATCTAAAAGAGTTGATTGAGGAATGCTGGGATCCGGAACCAGTTGTGAGGCCTACTTTCTCTGAGATCATTGTCCGGTTGGATAAAATAGTTTCCAACTGCTCAAAACATGGATGGTGGAAAGACACATTTAAGCTTCAGCTTCCTTGGAAATAA 1428 39.99 MDNITAQLKRGISRQFSTGSLQRNLSRQFTRQSSLDPRRNNLRFSFGRQSSLDPIRRCPGEDNELTVPENLDSTMQLLFMACRGDVMGVEDLLNEGIDVNSIDLDGRTALHIAGCEGHAEVVKLLLSRKANIDARDRWGSTAAADAKYYGNTEIYNILKARGAKVPKLRKTPMTVANPREVPEYELNPLELQIRRSDGISKGTYQVAKWNGTKVAVKILDKDCYCNPDSINAFKHELTLLEKVRHPNVVQFVGAVTQNLPMMIVSEYHPKGDLSCYLQKKGRLSPSKALRFGLDIARGMNYLHECKPDPVIHCDLKPKNILLDSGGQLKVSGFGLIRLSKTSPDKAKLAQPVVTDFSNLYLAPEVYKDEIFDRSVDAFSFGLILYEMIEGIQPFHPKTPEEVAKAICLEGKRPPFKIKSKSYPPDLKELIEECWDPEPVVRPTFSEIIVRLDKIVSNCSKHGWWKDTFKLQLPWK 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35794811 35803570 + evm.model.ptg000015l.1774 HCH4g1774 544018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1774 475 CDD STKc_MAP3K-like 199 451 - -
HCH4g1774 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1774 475 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 80 452 IPR051681 GO:0004674(PANTHER)
HCH4g1774 475 Gene3D Phosphorylase Kinase; domain 1 187 268 - -
HCH4g1774 475 Gene3D - 45 184 IPR036770 -
HCH4g1774 475 SUPERFAMILY Protein kinase-like (PK-like) 202 451 IPR011009 -
HCH4g1774 475 SMART ANK_2a 73 101 IPR002110 GO:0005515(InterPro)
HCH4g1774 475 SMART ANK_2a 138 167 IPR002110 GO:0005515(InterPro)
HCH4g1774 475 SMART ANK_2a 105 134 IPR002110 GO:0005515(InterPro)
HCH4g1774 475 SUPERFAMILY Ankyrin repeat 74 174 IPR036770 -
HCH4g1774 475 FunFam Os01g0748600 protein 179 470 - -
HCH4g1774 475 Gene3D Transferase(Phosphotransferase) domain 1 269 469 - -
HCH4g1774 475 Pfam Ankyrin repeats (3 copies) 78 165 IPR002110 GO:0005515(InterPro)
HCH4g1774 475 ProSiteProfiles Protein kinase domain profile. 189 464 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1774 475 FunFam Integrin-linked protein kinase 1 47 184 - -
HCH4g1774 475 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515(InterPro)
HCH4g1774 475 ProSiteProfiles Ankyrin repeat region circular profile. 105 137 - -
HCH4g1774 475 Pfam Protein tyrosine and serine/threonine kinase 199 451 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1774 475 FunFam serine/threonine-protein kinase STY46-like 186 269 - -
HCH4g1774 475 PIRSF ILK 8 472 - -
HCH4g1774 475 SMART serkin_6 193 455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0742 HCH-Chr3:5357484 HCH4g1774 HCH-Chr4:35794811 4.40E-78 dispersed
HCH4g1774 HCH-Chr4:35794811 HCH6g1751 HCH-Chr6:50008366 7.90E-38 dispersed
HCH4g1774 HCH-Chr4:35794811 HCH2g0899 HCH-Chr2:52483724 6.40E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81492 PF07714 PK_Tyr_Ser-Thr 5.10E-51 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1774 - - - 0.0