Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1831 ATGGAATCCATGGGAGAGATATCAGAGAGAGAATGGATCTCTCTCAATGGGGCATACACAGCTGAGGAGTCTGATTTCATGGCTACTTTGCTTAATAACTATTCTTTTCCAAATGAGCTAAATGCAGGTTTAAACTTGGAAATCCCAACTGCTTATTGGCCTGCAGGCAATGGATCTGCATTGAGCCTTGCAGCTGTTGATGAAGCTTCTTACTATTCTTCAGAAACTTCTGATTCCAACATGTATGGACTTTCTCAAGGGAATAATAATTACATCGTTGAATCTACCTTTTTTCCAAACAAGGAAAACTACAACTTGAGTGATTCTCAATCTCTTTTGTTGGCAACTAGTGCATCTTTGTCCCTGGATTTTTGTATGGAGGATGTGAGCCATGCCAATTCCTATCACATTCAGGAAGATAATGTCGGTTCGAACCGAAAAGTGAGGCAAATCAAAGCGCAACAGACCCGTGCTGAGGCTGCTGCTCTTATCATTGAAAAGAGTTTAGAACCAAGAGGGAAAGTCGAGGTGACAGTGGATGAACCTTTCAGAGAAAATAACAATTCCCTGGTTGAGAACTCTAAGAAAAGATCATTGAATTCACCTGATGTCGAGAAGACGAAGAGAAGTGTGAGAGCAAGGAAGAGCCAGAAGCTAGCATCAACTAGGCGCTATGAAGAAGACAACAATGTCAGTCCTAATGGGCAGTGCACAAGTACTTTTTGCTCTGAGGATGAATCTAATGAACCTCAAGAACTCAATGGTGGATCCAGCTCAACCTCAAAAGAGGCTGCAACTCTCAACTCAAATGGAAAACCAAGGGCCAGCAGGGGTTCAGCCACGGATCCGCAAAGCCTCTACGCGAGGAAAAGAAGAGAAAAAATTAATGAAAGGTTGAAAATCTTACAAAGCCTTGTCCCGAACGGAACGAAGGTTGACATCAGTACAATGCTTGAAGAAGCTGTACAATATGTGAAGTTTTTGCAGCTCCAAATTAAGTTGTTGAGCTCCGATAATCTATGGATGTATGCACCGATCGCTTACAATGGAATGGACATCGGACTTAATCTGAAGCTCATGAAACAAGACAATACATCAGAGTAG 1104 42.12 MESMGEISEREWISLNGAYTAEESDFMATLLNNYSFPNELNAGLNLEIPTAYWPAGNGSALSLAAVDEASYYSSETSDSNMYGLSQGNNNYIVESTFFPNKENYNLSDSQSLLLATSASLSLDFCMEDVSHANSYHIQEDNVGSNRKVRQIKAQQTRAEAAALIIEKSLEPRGKVEVTVDEPFRENNNSLVENSKKRSLNSPDVEKTKRSVRARKSQKLASTRRYEEDNNVSPNGQCTSTFCSEDESNEPQELNGGSSSTSKEAATLNSNGKPRASRGSATDPQSLYARKRREKINERLKILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDNLWMYAPIAYNGMDIGLNLKLMKQDNTSE 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47210590 47212123 - evm.model.ptg000015l.1831 HCH4g1831 544075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1831 367 Gene3D - 281 344 IPR036638 GO:0046983(InterPro)
HCH4g1831 367 FunFam Basic helix-loop-helix transcription factor 280 337 - -
HCH4g1831 367 SMART finulus 285 334 IPR011598 GO:0046983(InterPro)
HCH4g1831 367 MobiDBLite consensus disorder prediction 226 283 - -
HCH4g1831 367 MobiDBLite consensus disorder prediction 186 288 - -
HCH4g1831 367 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 90 351 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
HCH4g1831 367 Pfam Helix-loop-helix DNA-binding domain 289 329 IPR011598 GO:0046983(InterPro)
HCH4g1831 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 279 346 IPR036638 GO:0046983(InterPro)
HCH4g1831 367 CDD bHLH_AtIND_like 280 342 - -
HCH4g1831 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 279 328 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0562 HCH-Chr12:3308380 HCH4g1831 HCH-Chr4:47210590 3.40E-44 dispersed
HCH4g0590 HCH-Chr4:3896005 HCH4g1831 HCH-Chr4:47210590 1.90E-47 dispersed
HCH4g1831 HCH-Chr4:47210590 HCH8g0922 HCH-Chr8:45517757 1.60E-14 dispersed
HCH4g1831 HCH-Chr4:47210590 HCH7g0731 HCH-Chr7:9295925 2.30E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33548 PF00010 HLH 3.30E-09 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1831 - - - 0.0