Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH4g1835 | ATGAACGACGCCGATGTTTCCAAGCAGATCCAGCAGATGGTCAGATTCATCCGCCAGGAAGCCGAGGAAAAGGCCAACGAGATCTCTGTATCCGCTGAAGAAGAATTCAATATTGAAAAGCTGCAATTGGTTGAGGGTGAGAAAAAGAAGATCAGGCAAGAGTACGAGAAGAAGGAGAAGCAAGTTGATATTCGGAAGAAGATTGAGTACTCCATGCAACTTAATGCTTCCCGGATCAAAGTTCTGCAAGCTCAGGATGATGTTGTGAATTCTATGAAAGAGGCAACATCAAAGGAGCTTCTGCATGTTAGCCATGATCACCATGTCTACAAACATCTTCTGAAAGATCTCATTGTTCAGAGTTTGCTTCGATTGAAAGAGCCCGCTGTTTTATTGCGATGCCGCAAAGATGACCTCTTTTTGGTGGAATCTGTACTGAGCTCAGCAGCTGAGGAATATGCAGAGAAAGCAAAGGTTCACGAACCAGAGATTATTATCGACCATGTCCATCTTCCACCTGGTCCTAGCCATCACAATCCTCATGGTCTTTTCTGCTCTGGAGGTGTAGTGTTGGCATCTCGAGATGGGAAGATCGTTTTTGAGAACACCCTTGATGCTCGGTTGGATGTTGTCTTCCGTAAAAAACTTCCAGAGATCCGAAAACGGCTTTTTAGTCACGTCGTTGCATGA | 690 | 44.78 | MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEGEKKKIRQEYEKKEKQVDIRKKIEYSMQLNASRIKVLQAQDDVVNSMKEATSKELLHVSHDHHVYKHLLKDLIVQSLLRLKEPAVLLRCRKDDLFLVESVLSSAAEEYAEKAKVHEPEIIIDHVHLPPGPSHHNPHGLFCSGGVVLASRDGKIVFENTLDARLDVVFRKKLPEIRKRLFSHVVA | 229 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 47421665 | 47424479 | - | evm.model.ptg000015l.1835 | HCH4g1835 | 544079 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH4g1835 | 229 | Gene3D | - | 1 | 62 | - | - | |
| HCH4g1835 | 229 | SUPERFAMILY | V-type ATPase subunit E-like | 87 | 224 | - | - | |
| HCH4g1835 | 229 | Pfam | ATP synthase (E/31 kDa) subunit | 16 | 224 | IPR002842 | GO:0033178(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| HCH4g1835 | 229 | Coils | Coil | 41 | 61 | - | - | |
| HCH4g1835 | 229 | PANTHER | ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED | 1 | 226 | IPR002842 | GO:0033178(InterPro)|GO:0046961(PANTHER)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| HCH4g1835 | 229 | Hamap | V-type proton ATPase subunit E [atpE]. | 8 | 225 | IPR002842 | GO:0033178(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| HCH4g1835 | 229 | Gene3D | - | 92 | 227 | IPR038495 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH1g0343 | HCH-Chr1:50101046 | HCH4g1835 | HCH-Chr4:47421665 | 1.70E-118 | dispersed | |
| HCH4g1835 | HCH-Chr4:47421665 | HCH4g1852 | HCH-Chr4:48245657 | 8.90E-112 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH4g1835 | K02150 | - | csv:101217221 | 387.882 |