Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1853 ATGGGGAGTATTGAAGTTGGAAATGAGAGGAGTGTTACAGGATTGGCTGCAAAAGATCCATCTGGGTTTCTCTCTCCTTATACTTATACTCTCAGAGAGACAGGAGCTGAAGATGTATATATTAAGATTATATGTTGTGGAGTTTGTCACTCTGATCTTCATCAAGTCAAAAATGATCTTGGGATGTCTAATTATCCCATGGTTCCTGGGCACGAAGTGGTCGGAGAAGTAGTAGAGGTCGGATCAGAAGTGAAGAGATTTCATGTTGGAGAATTGGTTGGAGTTGGATGTATCGTCGGATCATGTTCAAAATGCAGTCCTTGTAATTCCGACAAGGAGCAATATTGTAACAAGAAAATATGGAGCTATAACGATGTTTATCACGACGGCAAGCCCACTCAAGGCGGCTTCTCCTCCGCCATGGTCGTCGATCAAAAGTTCGTCGTGAAAATCCCGGAAGGGATGTCACCGGAACAGGCAGCACCACTCCTCTGCGCCGGGGTGACGGTATATAGCCCTCTGAGCCACTTTGGGCTGAAAGAAAGTGGGTTAAGAGGGGGAATATTGGGTCTCGGCGGCGTCGGACATATGGGAGTGAAGGTGGCAAAGGCATTAGGCCACCATGTGACGGTGATAAGCTCGTCGGAGAAGAAGAGAGAGGAAGCTTTGGAGCATCTGGGGGCCGATCGGTATTTGGTTAGCTCTGACGAGGCTCAGATGCAAGAGGCCGTGGATTCGTTGGATTATATTATCGATACGGTGCCGGTGTTTCATCCTCTTGAGCCTTATCTCTCTCTTCTCAAACTTGATGGCAAGATTATCTTGATGGGTGTTATTAATACCCCTCTCCAATTCGTCTCCCCCCTTTTGATGCTTGGAAGGAAAACGATTACAGGGAGCTTCATAGGGAGCATGAATGAGACGCAAGAAGTACTAGACTTCTTCAAAGAGAAAGATCTGACTTCCATGATCGAAGTCATCAAACTCGACTACATCAACAAAGCTTTTGAGAGATTGGAGAAGAACGATGTCAGATATAGGTTCGTGGTCGATGTTGTCGGTAGTAAGCTTCCTAGTGAAGGATAA 1086 46.13 MGSIEVGNERSVTGLAAKDPSGFLSPYTYTLRETGAEDVYIKIICCGVCHSDLHQVKNDLGMSNYPMVPGHEVVGEVVEVGSEVKRFHVGELVGVGCIVGSCSKCSPCNSDKEQYCNKKIWSYNDVYHDGKPTQGGFSSAMVVDQKFVVKIPEGMSPEQAAPLLCAGVTVYSPLSHFGLKESGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSEKKREEALEHLGADRYLVSSDEAQMQEAVDSLDYIIDTVPVFHPLEPYLSLLKLDGKIILMGVINTPLQFVSPLLMLGRKTITGSFIGSMNETQEVLDFFKEKDLTSMIEVIKLDYINKAFERLEKNDVRYRFVVDVVGSKLPSEG 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48358294 48366079 + evm.model.ptg000015l.1853 HCH4g1853 544097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1853 361 FunFam Cinnamyl alcohol dehydrogenase 166 322 - -
HCH4g1853 361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 320 IPR036291 -
HCH4g1853 361 PANTHER ALDEHYDE REDUCTASE 11 352 IPR047109 GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER)
HCH4g1853 361 FunFam Putative cinnamyl alcohol dehydrogenase 6 323 352 - -
HCH4g1853 361 CDD CAD1 13 351 IPR047109 GO:0016616(InterPro)
HCH4g1853 361 Gene3D - 166 322 - -
HCH4g1853 361 FunFam probable cinnamyl alcohol dehydrogenase 15 172 - -
HCH4g1853 361 Pfam Alcohol dehydrogenase GroES-like domain 36 153 IPR013154 -
HCH4g1853 361 SUPERFAMILY GroES-like 19 183 IPR011032 -
HCH4g1853 361 Gene3D - 16 352 - -
HCH4g1853 361 Pfam Zinc-binding dehydrogenase 193 316 IPR013149 -
HCH4g1853 361 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
HCH4g1853 361 SMART PKS_ER_names_mod 22 350 IPR020843 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1853 HCH-Chr4:48358294 HCH5g0607 HCH-Chr5:4228455 4.50E-86 dispersed
HCH4g1853 HCH-Chr4:48358294 HCH4g1854 HCH-Chr4:48369516 4.40E-89 tandem
HCH12g0103 HCH-Chr12:541546 HCH4g1853 HCH-Chr4:48358294 8.30E-96 transposed
HCH2g0167 HCH-Chr2:12912715 HCH4g1853 HCH-Chr4:48358294 5.20E-106 transposed
HCH4g1853 HCH-Chr4:48358294 HCH7g0690 HCH-Chr7:7911404 1.30E-173 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1853 K00083 - csv:101222395 610.527