Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1857 ATGAACTCCAAAACCAGAAACAATCTAACTTTGTTTTGGAAAATCTCTCTCTTTGTTCCTCTACTTCTTTTTCTTCCTTCTTTGGCTCTCAACTCTGATGGCATTCTCTTGATTTCTCTAAAACATTCCATTCTTGGAGATCCTTTATCAGTATTAGAAAACTGGAACTACGGTGATGAAACTCCTTGTTCATGGAAAGGAGTCACCTGCTCTAAATTGGACAACGCCAATGGCTTCTTTCCAGACACGTTTAGAGTCACCAGCTTGGCTCTCCCAGAAAGCCAACTTCTGGGTTCCATTCCAGAAGAGCTTGGAATGATCCAACACCTTCAATATCTTGGTCTTTCAAGTAATTTCTTCAATGGGTCATTGCCCATTTCCATTTTCAATGCTTCAGAGCTTCAGATTCTTTCCCTCTCCAACAATGTCATCTCTGGTGGGTTACCAGAGTCCATTGCTGGCTTAAAGAGTCTTCAGTTACTAAATCTCTCTGACAACGCCTTGGCCGGAAACGTACCGAAAAATCTCACGACTTTGCAAAATCTCACTGTCATTTCTCTAAGAAGTAATTACTTCTCTGGCAATATTCCAAGCAACTTCACTTCAATCGAGGTTTTAGATCTATCTTCAAATTTACTCAATGGATCTCTACCTATAAATTTTGATGGTGAGAAATTACAGTATCTAAACTTCTCTTACAACAAAATCTCAAGCCCCATACCATCAGAATTCGCCAAAAGAATCCCCATAAATGCAACAATAGATCTCTCTTTCAACAACCTCACTGGGGCAATTCCTCAAACACTTTCTCTAGTTAACCAAAAAATGGAATCTTTCACAGGAAATGAAAATCTCTGTGGCAAACCATTAAAACATCTCTGTTCAATTCCTTCATCACTAACAACCCAACCCAATATTTCCTCATCTTCCTCATCCTCACCGGCAATCGCCGCTATACCGAAAACGATCGGTTCGATACCGGCAACACCATCAATCGTACCCCCGAACGGAACTCAAACTTCTCAACCTCAATCCACCATGAAACCAATCACAATTGCAGCAATCGCAATCGGAGACCTAATCGGAATATCAATTCTCGGTTTAGTAATCCTCTACATTTACCATCAAAGAAAACGAAAGAGCTCCAATTCCAAAACCCTAGAAATCACAAAAAAGCCCCAAATTGAATCAGAACAAAACAATCAAAATCCGAAAAAAACATCATCATCAGTTTTGTTCTGTTTAGCTAACAAAGGAGAAGAGACATCGGAGACGGCGACAAGTTCCGACAACGACGAACAAAAAGAAGTCTCCGGCGCCGTTGAAAGTAAGAAAAAAGGGGTTCTTGTAACGATTGATGGAGAAACAGAAATTGAATTGGAAACTTTGTTAAAGGCATCGGCTTTTATAATCGGAGCTAACGGCGGAAGTATTGTGTATAAAGCAGTGCTGGAAAACGGGACGGCGATGGCGGTGAGGAGAATTGGGGAAAGTGGAATTGAGAGAATGAGGGATTTTGAGAATCAAGTGAGAGTTATTGGGAAGATTAAGCATCAGAATTTGGTGAAAATTTTAGGGTTTTATTGGGGAGAAGATGAGAAGCTGATAATCTACGAGTTTGTCTCCAATGGCTGCCTTGCTGCTTCCATTCAGAGAAAACCAAGTTCCTCCTCAGCTTCTTCCTCACAGAGTACTACTCATCTATCATTTGACCTCCGACTGAAGATAGCAAGAGGCATTGCTCGTGGGCTAGCTTTCATCCATGACAAGAAGCAAGTTCATGGCAACATCAAACCCACCAACATCCTCTTCAACTCTGACATGGAGCCATTGATCAACGATTTCGGTCTCGACAAGCTCACTTTCAGCAGCTCCAGCAATAAGATCATTGTCTCATCAGCTGGTTCGGCCAGGAACCTGGGAAGCCATAGATCCACCCCAACTCGTGATCATCATCAAGATCATTCCGGCATCGGCAGCAGCCCCGGTACCGGTGTGAACCTTGTTGCATCGGTTTATCAGGCGCCTGAGTCTCTCAAGAGCCTGAAACCGAGCCCGAAGTGGGATGTTTACTCATTTGGTGTGATTTTACTTGAGCTTCTCAGTGGTAGAGCGATGTCAGAGAGGGAGTTGAATCAATGGAATGTTGGTTTGATGACAGAAGACGAGAGCCGGATGAAGAAGATGACCGATATGACGATAAGAGGTGAAGTAGAAGGGAGAGAAGATGCAGTGATGGCTTGTTTTAGATTAGGGTTTAGCTGTGTTTGTTTTGTCCCACAAAAGAGACCAAGCATGAAAGAAGCACTACAAGTACTTGAGAAGATCCCTACCATTGGTTCTCGCTAA 2349 42.49 MNSKTRNNLTLFWKISLFVPLLLFLPSLALNSDGILLISLKHSILGDPLSVLENWNYGDETPCSWKGVTCSKLDNANGFFPDTFRVTSLALPESQLLGSIPEELGMIQHLQYLGLSSNFFNGSLPISIFNASELQILSLSNNVISGGLPESIAGLKSLQLLNLSDNALAGNVPKNLTTLQNLTVISLRSNYFSGNIPSNFTSIEVLDLSSNLLNGSLPINFDGEKLQYLNFSYNKISSPIPSEFAKRIPINATIDLSFNNLTGAIPQTLSLVNQKMESFTGNENLCGKPLKHLCSIPSSLTTQPNISSSSSSSPAIAAIPKTIGSIPATPSIVPPNGTQTSQPQSTMKPITIAAIAIGDLIGISILGLVILYIYHQRKRKSSNSKTLEITKKPQIESEQNNQNPKKTSSSVLFCLANKGEETSETATSSDNDEQKEVSGAVESKKKGVLVTIDGETEIELETLLKASAFIIGANGGSIVYKAVLENGTAMAVRRIGESGIERMRDFENQVRVIGKIKHQNLVKILGFYWGEDEKLIIYEFVSNGCLAASIQRKPSSSSASSSQSTTHLSFDLRLKIARGIARGLAFIHDKKQVHGNIKPTNILFNSDMEPLINDFGLDKLTFSSSSNKIIVSSAGSARNLGSHRSTPTRDHHQDHSGIGSSPGTGVNLVASVYQAPESLKSLKPSPKWDVYSFGVILLELLSGRAMSERELNQWNVGLMTEDESRMKKMTDMTIRGEVEGREDAVMACFRLGFSCVCFVPQKRPSMKEALQVLEKIPTIGSR 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48540912 48545177 + evm.model.ptg000015l.1857 HCH4g1857 544101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1857 782 Pfam Leucine Rich Repeat 225 245 IPR001611 GO:0005515(InterPro)
HCH4g1857 782 Pfam Leucine Rich Repeat 181 202 IPR001611 GO:0005515(InterPro)
HCH4g1857 782 MobiDBLite consensus disorder prediction 383 408 - -
HCH4g1857 782 Pfam Leucine rich repeat 109 168 IPR001611 GO:0005515(InterPro)
HCH4g1857 782 Pfam Protein kinase domain 668 771 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1857 782 Gene3D Transferase(Phosphotransferase) domain 1 543 779 - -
HCH4g1857 782 FunFam Leucine-rich repeat receptor-like protein kinase 30 198 - -
HCH4g1857 782 SUPERFAMILY L domain-like 32 292 - -
HCH4g1857 782 CDD TM_EGFR-like 345 380 - -
HCH4g1857 782 Pfam Protein tyrosine and serine/threonine kinase 479 624 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1857 782 FunFam Leucine-rich repeat receptor-like protein kinase 202 296 - -
HCH4g1857 782 PANTHER OS05G0588300 PROTEIN 181 777 IPR050994 -
HCH4g1857 782 MobiDBLite consensus disorder prediction 635 663 - -
HCH4g1857 782 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
HCH4g1857 782 Gene3D Ribonuclease Inhibitor 30 199 IPR032675 -
HCH4g1857 782 Gene3D Ribonuclease Inhibitor 200 296 IPR032675 -
HCH4g1857 782 Gene3D Phosphorylase Kinase; domain 1 428 540 - -
HCH4g1857 782 ProSiteProfiles Protein kinase domain profile. 465 779 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1857 782 ProSiteProfiles Leucine-rich repeat profile. 225 246 IPR001611 GO:0005515(InterPro)
HCH4g1857 782 SUPERFAMILY Protein kinase-like (PK-like) 470 773 IPR011009 -
HCH4g1857 782 MobiDBLite consensus disorder prediction 387 408 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0010 HCH-Chr2:695399 HCH4g1857 HCH-Chr4:48540912 3.80E-156 dispersed
HCH4g1857 HCH-Chr4:48540912 HCH9g1129 HCH-Chr9:14515102 1.10E-47 dispersed
HCH4g1857 HCH-Chr4:48540912 HCH10g1291 HCH-Chr10:45366271 5.60E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81493 PF00069 Pkinase 1.60E-30 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1857 - - - 0.0