Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1861 ATGACAATCCATAATAATGAAAACCCTTCATTTTTGGGAGACTCTCTCTTATGTGAAGAAGAGAAACTAGATGAAGAAGAAGAAGAGGAAGCAAATAATGGTATAAAATATGATTTTTTTCAAATGGGTCCTTTGAGGGAAGATCTCTTTTGTGAAAATGAAGAGCTTCTTTCATTGTTTTCCAAGGAAAAAGAGCAAAGAAAACAAACCCATTATCTCAAAATGGAAACTTTAGCAACAGATCCCACTCTCTCCATTGCTCATTCTATAGCTGTGAAATGGATTCTCAAAGTCAAATCCCATTATGGATTTTCAACTCTCACTGCTATATTAGCTGTTTCTTACCTTGATAGATTCCTCTCAAGCTTCCATTTTCAGAGTGAGAAGCCATGGATGAATCAGTTAGTAGCTGTGACTTGTCTCTCATTGGCTGCTAAAGTGGAAGAGATTCATGTTCCTCTCCTTGTAGATCTTCAAGTTGAAGATGCAAAGTTTGTGTTTGAGGCTAAAACAATTCAAAGAATGGAGCTTTTAATCCTCTCTACCCTTCAATGGAAGATGCATCCTGTTACTCCTTACTTATTTCTTGATCACATTGTAAGAAGGCTTGGATATAATTCCACTCTTCACTCTGAGTTTTTCAACCGCTCTGAGAATCTTCTTCTCTCTCTATTATCAGATTCAAGATTTGTGGGATATCTTCCTTCAGTAATAGCAACTGCTACAATGATGGAAGTAATAGATCAGATTGAACCTGAAAGATCATCAGAGTATCAAGATCAGCTTCTTGGTGTTCTCCAAATGAGCAAGGAAAAAGTGAAATGCTGTTATAATCTTGTTATGGAGCATTCAAAGAGCAATGGGAATGGGAATTATTATTATTATCATCACAACCCTCTGAAGCGGAAATATGGGAGAGTCCCAGGCAGCCCCAGTGGTGTAATTGATGCTGGTTTCAGCTCTGATAGCTCCAATGATTCATGGACATTTTGA 993 37.36 MTIHNNENPSFLGDSLLCEEEKLDEEEEEEANNGIKYDFFQMGPLREDLFCENEELLSLFSKEKEQRKQTHYLKMETLATDPTLSIAHSIAVKWILKVKSHYGFSTLTAILAVSYLDRFLSSFHFQSEKPWMNQLVAVTCLSLAAKVEEIHVPLLVDLQVEDAKFVFEAKTIQRMELLILSTLQWKMHPVTPYLFLDHIVRRLGYNSTLHSEFFNRSENLLLSLLSDSRFVGYLPSVIATATMMEVIDQIEPERSSEYQDQLLGVLQMSKEKVKCCYNLVMEHSKSNGNGNYYYYHHNPLKRKYGRVPGSPSGVIDAGFSSDSSNDSWTF 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48653593 48655069 - evm.model.ptg000015l.1861 HCH4g1861 544105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1861 330 Pfam Cyclin, N-terminal domain 59 187 IPR006671 -
HCH4g1861 330 CDD CYCLIN_AtCycD-like_rpt2 190 280 - -
HCH4g1861 330 Gene3D - 58 278 - -
HCH4g1861 330 SMART Cyclin_C_2 190 326 IPR004367 -
HCH4g1861 330 Pfam Cyclin, C-terminal domain 190 307 IPR004367 -
HCH4g1861 330 FunFam D6-type cyclin 69 188 - -
HCH4g1861 330 SUPERFAMILY Cyclin-like 191 293 IPR036915 -
HCH4g1861 330 SUPERFAMILY Cyclin-like 49 188 IPR036915 -
HCH4g1861 330 Gene3D - 69 188 - -
HCH4g1861 330 PANTHER CYCLINS 33 279 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
HCH4g1861 330 CDD CYCLIN_AtCycD-like_rpt1 89 185 - -
HCH4g1861 330 SMART cyclin_7 93 181 IPR013763 -
HCH4g1861 330 SMART cyclin_7 194 282 IPR013763 -
HCH4g1861 330 FunFam CYCLIN D32 189 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0596 HCH-Chr12:3496908 HCH4g1861 HCH-Chr4:48653593 7.40E-73 dispersed
HCH14g0311 HCH-Chr14:31788478 HCH4g1861 HCH-Chr4:48653593 1.00E-71 dispersed
HCH4g0620 HCH-Chr4:4058121 HCH4g1861 HCH-Chr4:48653593 3.50E-78 dispersed
HCH4g0920 HCH-Chr4:5898673 HCH4g1861 HCH-Chr4:48653593 1.90E-38 dispersed
HCH4g1861 HCH-Chr4:48653593 HCH9g0688 HCH-Chr9:4591929 1.10E-22 dispersed
HCH4g1861 HCH-Chr4:48653593 HCH7g0676 HCH-Chr7:7566241 2.60E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1861 K14505 - csv:101221213 393.275