Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1867 ATGGCGGAGCGTGGATCTTATGCCTTAGGTCCTCGTTTAGATATTCAACAGTTACTGATAGAAGCAAAACATCGATGGTTACGTCCAGCTGAAATTTGTGAAATACTTCGTAATTATCCGAAGTTTCATATTGCTTCAGAGCCTCCGGACAGACCACCAAGTGGTTCACTTTTTCTTTTTGATCGGAAGGTTTTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACTGTGAAGGAAGCTCATGAGAAGCTGAAGGTTGGCAGCATTGATGTACTACACTGCTATTATGCTCATGGAGAAGAAAATGAGAACTTTCAACGACGCAGTTATTGGATGCTTGAAGAGGACCTAATGCATATAGTTTTTGTTCACTACTTGGAGGTTAAGGGCAATAGAACCAATATCGGAGCTGCTATTGAGACTGATGAGGTTTCATCAAGTTCACAGAAGAGTAGTCCCAAGAGTTCTAGCTATTCCACCAGTCACAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACTAGCACCTTGACATCGTTTTGTGAAGATGCTGATAATGAAGATACGTACCAAGCAACTTCAAGACTTCACTCATTTCCAACGTCACCAAAAATGGGAAATGGTCTTCTGGGGGACAAAAAAGATGCTGGTCTATCAAATTTTTATTTTCCGCATTCTTGTTCTGGCAATGCTGAAGGTTGGTCATCAGTTCCTGCTGTGGAATATGTATCGCAAGTTCAGAATGGACTTGGAGTTACTGATGATGGTACTTGTGTGATTGATTCTCAAAAGACACTCAGCTCTGCCTCGTGGGAAGAGATCTTGCAACAATGTACAACTGGATTTCATACTTCACCTTCCCATGTTGTAGATTCTTCCATTGAATCTTCATCCACTGGATATGTCCTTGGACACAATAATTTTATTCCCAGCAAGCTTTTAGCGGGTAATAATAATGTTATTAAAGAGGACTGTGGGAGCTCTCTGACAATGACATCAAATTGGCAGGTTCCTTCTGATGACAATATTTTATCCTTTTCGAAAGAGCAAGTTGACCAGTTTCCAGATCTGTATTCAGCTTACAATATTGATAGCAGGTTAACTGCGCAAAAATCTAATGGTGCGGTTTTCGGAAGTGCACATGAGATATTTTCTGCTCATCCTGATATGGAGAATATGGATTTTTTGTCAAACAACCTTCAATTACAGTTTAAAGGAGAATCTTCATCTGAAAGGAAGTTGAATTCTGAGAATGATGTGTCTAAGGAAGGTAACATCAGCTATTCCATGACTTTGAAACAATCATTACTAGATGGAGAGGAAAGTTTGAAGAAAGTTGACAGCTTCTCCCGGTGGATGACTAGAGAACTTGTGGAGGTTGATGATTTGCGTATACATCCATCATCTGGCTTATCTTGGAGTACTGAAGAATGTGGTAATATGGTGGATGATTCCTCATTAAGCCCTTCTCTCTCTGAAGACCAGCTTTTCAGTATAACTGATTTTTCACCAAAGTGGACATTTTCAGATTTAGAAACTGAGGTCGTGATTATAGGAAAATTTTTGGTGATTGAACAAGGTGGCACAAAATGTTACTGGTCATGTATGTTTGGGGAAGTAGAGGTTCCTGCAGAGGTTTTGGCTGATGGGATTCTTTGTTGTCATGCACCACCTCATAGTGTTGGGCGAGTCCCTTTCTATGTGACATGTTCCAACAGATTAGCCTGCAGTGAAGTGCGTGAATTTGATTATTTAGCCGGCTCAGCTGAGGGTGTAGATGTTGCAGATATATATAATGGGGCTACAAATGAATTTTTTATGCATTTGCAATTCGAGAGGTTACTATCTCTTAGGTCTTCTTGTCCTCATAACCTCTTAGAAGGTGCCTTGGAGAATGGAAACTTGATCAGAAAGCTTATCTCATTAAAAGAAGAAGAGGATTGTTATGGGGAAGAACAAAATTTTCAAAATGATCAGATTCAGCATCAAGGCAAGGAGCATCTCTTTGGAAAGCTGATGAAGGAAAAGTTGTACACATGGCTTATCCGTAAAGTAACTGAAGATGGCAAAGGTCCTAATATTTTAGATGATAAGGGGCAGGGAGTAATTCATTTGGCTGCAGCTCTTGGTTATGATTGGGCAATGAAACCAATTGTAATTGCAGGAGTGAGTATCAATTTCAGAGATTCTAATGGATGGACTGCCCTTCATTGGGCAGCGTTCTGTGGCAGAGAGCAGACGGTTGCAATCCTTATATCTTTGGGCGCTGCTCCTGGATTGCTGACAGATCCATCTCCAGAACATCCGTTGAGCAGAACACCTGCAGACCTTGCTTCTGCTAATGGACACAAAGGGATCTCTGGATTTCTTGCTGAGTCATCATTGACCAGCCATCTTGTATCCCTAACAATGTCAGATTCCAAGGAAGATGGTGTGCTAGATGTTTCAACTAGGAAAGTTGTGCACACTATTTCTGAACGGATGGCAACACCAATAAATGATGGTTTTGTGTCTGCTGAATTGTCATTGAAGGATTCACTTACTGCTGTGTGTAATGCTACACAAGCAGCTGATCGTATATATCAGATGTTTAGGTTGCAGTCATTCCAGAGGAAGCAATTATCAGAGTGTGGTTCTGATGAATTCGGAACCTTAGATGAAAATGCAATTTCATTTGTTTCTTCCAGGGCAAGCAAGCCTGGACTAAGTAGTGGGTTTGCCCATGCTGCTGCAGTTCACATCCAGAAAAAGTTTCGTGGTTGGAAAAAGAGAAAAGAGTTCTTGCTAATACGTCAAAGAATAGTAAAAATTCAGGCCCATGTAAGAGGACACCAGGTGAGGAAGCAATATAGAAAAATTGTTTGGTCAGTAGGAATTTTAGACAAGATTATTTTGAGATGGAGACGTAAAGGGAGTGGTCTGCGAGGGTTCCGACCAGATGCAATTGCCAAGGAACCAACCCCACGGATTGAACGATCTAAAGAGGATGATTATGATTTTCTGAAGGAGGGAAGGAAACAGAATGAGGAGAGGTTGCAAAAAGCACTTACGAGGGTTAAGTCCATGGCTCAGTATCCTGAGGGACGAGATCAATACCGTAGGCTGCTTACTGTAGTTCAAAAGTGTCGTGAAACCAAGGTGAGTAATATGGCTATAAGTAGTAGTTCAGGAGAGATGATAGAAGGTGACGACATGATCGACATTGATACACTGCTGGACGATGATGCTTTGATGTCAATGACATTTGATTGA 3279 41.11 MAERGSYALGPRLDIQQLLIEAKHRWLRPAEICEILRNYPKFHIASEPPDRPPSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEDLMHIVFVHYLEVKGNRTNIGAAIETDEVSSSSQKSSPKSSSYSTSHNQAASENADSPSPTSTLTSFCEDADNEDTYQATSRLHSFPTSPKMGNGLLGDKKDAGLSNFYFPHSCSGNAEGWSSVPAVEYVSQVQNGLGVTDDGTCVIDSQKTLSSASWEEILQQCTTGFHTSPSHVVDSSIESSSTGYVLGHNNFIPSKLLAGNNNVIKEDCGSSLTMTSNWQVPSDDNILSFSKEQVDQFPDLYSAYNIDSRLTAQKSNGAVFGSAHEIFSAHPDMENMDFLSNNLQLQFKGESSSERKLNSENDVSKEGNISYSMTLKQSLLDGEESLKKVDSFSRWMTRELVEVDDLRIHPSSGLSWSTEECGNMVDDSSLSPSLSEDQLFSITDFSPKWTFSDLETEVVIIGKFLVIEQGGTKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGRVPFYVTCSNRLACSEVREFDYLAGSAEGVDVADIYNGATNEFFMHLQFERLLSLRSSCPHNLLEGALENGNLIRKLISLKEEEDCYGEEQNFQNDQIQHQGKEHLFGKLMKEKLYTWLIRKVTEDGKGPNILDDKGQGVIHLAAALGYDWAMKPIVIAGVSINFRDSNGWTALHWAAFCGREQTVAILISLGAAPGLLTDPSPEHPLSRTPADLASANGHKGISGFLAESSLTSHLVSLTMSDSKEDGVLDVSTRKVVHTISERMATPINDGFVSAELSLKDSLTAVCNATQAADRIYQMFRLQSFQRKQLSECGSDEFGTLDENAISFVSSRASKPGLSSGFAHAAAVHIQKKFRGWKKRKEFLLIRQRIVKIQAHVRGHQVRKQYRKIVWSVGILDKIILRWRRKGSGLRGFRPDAIAKEPTPRIERSKEDDYDFLKEGRKQNEERLQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKVSNMAISSSSGEMIEGDDMIDIDTLLDDDALMSMTFD 1092
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 49253703 49278935 + evm.model.ptg000015l.1867 HCH4g1867 544111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1867 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 916 966 IPR027417 -
HCH4g1867 1092 Gene3D Immunoglobulins 501 597 IPR013783 -
HCH4g1867 1092 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1055 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
HCH4g1867 1092 FunFam Calmodulin-binding transcription activator 2 501 597 - -
HCH4g1867 1092 ProSiteProfiles Ankyrin repeat profile. 740 772 IPR002110 GO:0005515(InterPro)
HCH4g1867 1092 SMART CG_1_2 18 136 IPR005559 GO:0003677(InterPro)
HCH4g1867 1092 FunFam Calmodulin-binding transcription activator 2 915 963 - -
HCH4g1867 1092 Pfam Ankyrin repeats (3 copies) 712 800 IPR002110 GO:0005515(InterPro)
HCH4g1867 1092 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677(InterPro)
HCH4g1867 1092 SMART ANK_2a 740 769 IPR002110 GO:0005515(InterPro)
HCH4g1867 1092 ProSiteProfiles Ankyrin repeat region circular profile. 740 765 - -
HCH4g1867 1092 Gene3D - 665 810 IPR036770 -
HCH4g1867 1092 ProSiteProfiles IQ motif profile. 916 945 - -
HCH4g1867 1092 SUPERFAMILY Ankyrin repeat 690 801 IPR036770 -
HCH4g1867 1092 ProSiteProfiles IQ motif profile. 939 963 - -
HCH4g1867 1092 SMART iq_5 915 937 IPR000048 GO:0005515(InterPro)
HCH4g1867 1092 SMART iq_5 938 960 IPR000048 GO:0005515(InterPro)
HCH4g1867 1092 Pfam IPT/TIG domain 507 581 IPR002909 -
HCH4g1867 1092 Gene3D - 916 963 - -
HCH4g1867 1092 Pfam CG-1 domain 21 134 IPR005559 GO:0003677(InterPro)
HCH4g1867 1092 SUPERFAMILY E set domains 508 593 IPR014756 -
HCH4g1867 1092 Pfam IQ calmodulin-binding motif 917 936 IPR000048 GO:0005515(InterPro)
HCH4g1867 1092 Pfam IQ calmodulin-binding motif 941 960 IPR000048 GO:0005515(InterPro)
HCH4g1867 1092 MobiDBLite consensus disorder prediction 147 189 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1233 HCH-Chr13:39901756 HCH4g1867 HCH-Chr4:49253703 3.50E-222 dispersed
HCH4g1867 HCH-Chr4:49253703 HCH6g1739 HCH-Chr6:49948365 3.40E-92 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33550 PF03859 CG-1 1.10E-50 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1867 K21596 - csv:101203707 1635.93