Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1867 ATGGCGGAGCGTGGATCTTATGCCTTAGGTCCTCGTTTAGATATTCAACAGTTACTGATAGAAGCAAAACATCGATGGTTACGTCCAGCTGAAATTTGTGAAATACTTCGTAATTATCCGAAGTTTCATATTGCTTCAGAGCCTCCGGACAGACCACCAAGTGGTTCACTTTTTCTTTTTGATCGGAAGGTTTTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACTGTGAAGGAAGCTCATGAGAAGCTGAAGGTTGGCAGCATTGATGTACTACACTGCTATTATGCTCATGGAGAAGAAAATGAGAACTTTCAACGACGCAGTTATTGGATGCTTGAAGAGGACCTAATGCATATAGTTTTTGTTCACTACTTGGAGGTTAAGGGCAATAGAACCAATATCGGAGCTGCTATTGAGACTGATGAGGTTTCATCAAGTTCACAGAAGAGTAGTCCCAAGAGTTCTAGCTATTCCACCAGTCACAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACTAGCACCTTGACATCGTTTTGTGAAGATGCTGATAATGAAGATACGTACCAAGCAACTTCAAGACTTCACTCATTTCCAACGTCACCAAAAATGGGAAATGGTCTTCTGGGGGACAAAAAAGATGCTGGTCTATCAAATTTTTATTTTCCGCATTCTTGTTCTGGCAATGCTGAAGGTTGGTCATCAGTTCCTGCTGTGGAATATGTATCGCAAGTTCAGAATGGACTTGGAGTTACTGATGATGGTACTTGTGTGATTGATTCTCAAAAGACACTCAGCTCTGCCTCGTGGGAAGAGATCTTGCAACAATGTACAACTGGATTTCATACTTCACCTTCCCATGTTGTAGATTCTTCCATTGAATCTTCATCCACTGGATATGTCCTTGGACACAATAATTTTATTCCCAGCAAGCTTTTAGCGGGTAATAATAATGTTATTAAAGAGGACTGTGGGAGCTCTCTGACAATGACATCAAATTGGCAGGTTCCTTCTGATGACAATATTTTATCCTTTTCGAAAGAGCAAGTTGACCAGTTTCCAGATCTGTATTCAGCTTACAATATTGATAGCAGGTTAACTGCGCAAAAATCTAATGGTGCGGTTTTCGGAAGTGCACATGAGATATTTTCTGCTCATCCTGATATGGAGAATATGGATTTTTTGTCAAACAACCTTCAATTACAGTTTAAAGGAGAATCTTCATCTGAAAGGAAGTTGAATTCTGAGAATGATGTGTCTAAGGAAGGTAACATCAGCTATTCCATGACTTTGAAACAATCATTACTAGATGGAGAGGAAAGTTTGAAGAAAGTTGACAGCTTCTCCCGGTGGATGACTAGAGAACTTGTGGAGGTTGATGATTTGCGTATACATCCATCATCTGGCTTATCTTGGAGTACTGAAGAATGTGGTAATATGGTGGATGATTCCTCATTAAGCCCTTCTCTCTCTGAAGACCAGCTTTTCAGTATAACTGATTTTTCACCAAAGTGGACATTTTCAGATTTAGAAACTGAGGTCGTGATTATAGGAAAATTTTTGGTGATTGAACAAGGTGGCACAAAATGTTACTGGTCATGTATGTTTGGGGAAGTAGAGGTTCCTGCAGAGGTTTTGGCTGATGGGATTCTTTGTTGTCATGCACCACCTCATAGTGTTGGGCGAGTCCCTTTCTATGTGACATGTTCCAACAGATTAGCCTGCAGTGAAGTGCGTGAATTTGATTATTTAGCCGGCTCAGCTGAGGGTGTAGATGTTGCAGATATATATAATGGGGCTACAAATGAATTTTTTATGCATTTGCAATTCGAGAGGTTACTATCTCTTAGGTCTTCTTGTCCTCATAACCTCTTAGAAGGTGCCTTGGAGAATGGAAACTTGATCAGAAAGCTTATCTCATTAAAAGAAGAAGAGGATTGTTATGGGGAAGAACAAAATTTTCAAAATGATCAGATTCAGCATCAAGGCAAGGAGCATCTCTTTGGAAAGCTGATGAAGGAAAAGTTGTACACATGGCTTATCCGTAAAGTAACTGAAGATGGCAAAGGTCCTAATATTTTAGATGATAAGGGGCAGGGAGTAATTCATTTGGCTGCAGCTCTTGGTTATGATTGGGCAATGAAACCAATTGTAATTGCAGGAGTGAGTATCAATTTCAGAGATTCTAATGGATGGACTGCCCTTCATTGGGCAGCGTTCTGTGGCAGAGAGCAGACGGTTGCAATCCTTATATCTTTGGGCGCTGCTCCTGGATTGCTGACAGATCCATCTCCAGAACATCCGTTGAGCAGAACACCTGCAGACCTTGCTTCTGCTAATGGACACAAAGGGATCTCTGGATTTCTTGCTGAGTCATCATTGACCAGCCATCTTGTATCCCTAACAATGTCAGATTCCAAGGAAGATGGTGTGCTAGATGTTTCAACTAGGAAAGTTGTGCACACTATTTCTGAACGGATGGCAACACCAATAAATGATGGTTTTGTGTCTGCTGAATTGTCATTGAAGGATTCACTTACTGCTGTGTGTAATGCTACACAAGCAGCTGATCGTATATATCAGATGTTTAGGTTGCAGTCATTCCAGAGGAAGCAATTATCAGAGTGTGGTTCTGATGAATTCGGAACCTTAGATGAAAATGCAATTTCATTTGTTTCTTCCAGGGCAAGCAAGCCTGGACTAAGTAGTGGGTTTGCCCATGCTGCTGCAGTTCACATCCAGAAAAAGTTTCGTGGTTGGAAAAAGAGAAAAGAGTTCTTGCTAATACGTCAAAGAATAGTAAAAATTCAGGCCCATGTAAGAGGACACCAGGTGAGGAAGCAATATAGAAAAATTGTTTGGTCAGTAGGAATTTTAGACAAGATTATTTTGAGATGGAGACGTAAAGGGAGTGGTCTGCGAGGGTTCCGACCAGATGCAATTGCCAAGGAACCAACCCCACGGATTGAACGATCTAAAGAGGATGATTATGATTTTCTGAAGGAGGGAAGGAAACAGAATGAGGAGAGGTTGCAAAAAGCACTTACGAGGGTTAAGTCCATGGCTCAGTATCCTGAGGGACGAGATCAATACCGTAGGCTGCTTACTGTAGTTCAAAAGTGTCGTGAAACCAAGGTGAGTAATATGGCTATAAGTAGTAGTTCAGGAGAGATGATAGAAGGTGACGACATGATCGACATTGATACACTGCTGGACGATGATGCTTTGATGTCAATGACATTTGATTGA 3279 41.11 MAERGSYALGPRLDIQQLLIEAKHRWLRPAEICEILRNYPKFHIASEPPDRPPSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEDLMHIVFVHYLEVKGNRTNIGAAIETDEVSSSSQKSSPKSSSYSTSHNQAASENADSPSPTSTLTSFCEDADNEDTYQATSRLHSFPTSPKMGNGLLGDKKDAGLSNFYFPHSCSGNAEGWSSVPAVEYVSQVQNGLGVTDDGTCVIDSQKTLSSASWEEILQQCTTGFHTSPSHVVDSSIESSSTGYVLGHNNFIPSKLLAGNNNVIKEDCGSSLTMTSNWQVPSDDNILSFSKEQVDQFPDLYSAYNIDSRLTAQKSNGAVFGSAHEIFSAHPDMENMDFLSNNLQLQFKGESSSERKLNSENDVSKEGNISYSMTLKQSLLDGEESLKKVDSFSRWMTRELVEVDDLRIHPSSGLSWSTEECGNMVDDSSLSPSLSEDQLFSITDFSPKWTFSDLETEVVIIGKFLVIEQGGTKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGRVPFYVTCSNRLACSEVREFDYLAGSAEGVDVADIYNGATNEFFMHLQFERLLSLRSSCPHNLLEGALENGNLIRKLISLKEEEDCYGEEQNFQNDQIQHQGKEHLFGKLMKEKLYTWLIRKVTEDGKGPNILDDKGQGVIHLAAALGYDWAMKPIVIAGVSINFRDSNGWTALHWAAFCGREQTVAILISLGAAPGLLTDPSPEHPLSRTPADLASANGHKGISGFLAESSLTSHLVSLTMSDSKEDGVLDVSTRKVVHTISERMATPINDGFVSAELSLKDSLTAVCNATQAADRIYQMFRLQSFQRKQLSECGSDEFGTLDENAISFVSSRASKPGLSSGFAHAAAVHIQKKFRGWKKRKEFLLIRQRIVKIQAHVRGHQVRKQYRKIVWSVGILDKIILRWRRKGSGLRGFRPDAIAKEPTPRIERSKEDDYDFLKEGRKQNEERLQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKVSNMAISSSSGEMIEGDDMIDIDTLLDDDALMSMTFD 1092
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 49253703 49278935 + evm.model.ptg000015l.1867 HCH4g1867 544111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1867 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 916 966 IPR027417 -
HCH4g1867 1092 Gene3D Immunoglobulins 501 597 IPR013783 -
HCH4g1867 1092 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1055 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
HCH4g1867 1092 FunFam Calmodulin-binding transcription activator 2 501 597 - -
HCH4g1867 1092 ProSiteProfiles Ankyrin repeat profile. 740 772 IPR002110 GO:0005515(InterPro)
HCH4g1867 1092 SMART CG_1_2 18 136 IPR005559 GO:0003677(InterPro)
HCH4g1867 1092 FunFam Calmodulin-binding transcription activator 2 915 963 - -
HCH4g1867 1092 Pfam Ankyrin repeats (3 copies) 712 800 IPR002110 GO:0005515(InterPro)
HCH4g1867 1092 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677(InterPro)
HCH4g1867 1092 SMART ANK_2a 740 769 IPR002110 GO:0005515(InterPro)
HCH4g1867 1092 ProSiteProfiles Ankyrin repeat region circular profile. 740 765 - -
HCH4g1867 1092 Gene3D - 665 810 IPR036770 -
HCH4g1867 1092 ProSiteProfiles IQ motif profile. 916 945 - -
HCH4g1867 1092 SUPERFAMILY Ankyrin repeat 690 801 IPR036770 -
HCH4g1867 1092 ProSiteProfiles IQ motif profile. 939 963 - -
HCH4g1867 1092 SMART iq_5 915 937 IPR000048 GO:0005515(InterPro)
HCH4g1867 1092 SMART iq_5 938 960 IPR000048 GO:0005515(InterPro)
HCH4g1867 1092 Pfam IPT/TIG domain 507 581 IPR002909 -
HCH4g1867 1092 Gene3D - 916 963 - -
HCH4g1867 1092 Pfam CG-1 domain 21 134 IPR005559 GO:0003677(InterPro)
HCH4g1867 1092 SUPERFAMILY E set domains 508 593 IPR014756 -
HCH4g1867 1092 Pfam IQ calmodulin-binding motif 917 936 IPR000048 GO:0005515(InterPro)
HCH4g1867 1092 Pfam IQ calmodulin-binding motif 941 960 IPR000048 GO:0005515(InterPro)
HCH4g1867 1092 MobiDBLite consensus disorder prediction 147 189 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1867 K21596 - - csv:101203707 1635.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1233 HCH-Chr13:39901756 HCH4g1867 HCH-Chr4:49253703 3.50E-222 dispersed
HCH4g1867 HCH-Chr4:49253703 HCH6g1739 HCH-Chr6:49948365 3.40E-92 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g1867 . 1 1092 CAMTA Transcription Factor Family AT5G64220 54.8 4.6e-288 987.6
HCH10g0079 . 5 967 CAMTA Transcription Factor Family AT1G67310 51.5 2.5e-259 892.1
HCH6g1739 . 35 915 CAMTA Transcription Factor Family AT3G16940 55.2 1.8e-268 922.2
HCH6g1739 . 12 633 CAMTA Transcription Factor Family AT4G16150 54.9 1.3e-198 690.3
HCH4g1867 . 1 1092 CAMTA Transcription Factor Family AT5G64220 54.8 4.6e-288 987.6
HCH10g0079 . 5 967 CAMTA Transcription Factor Family AT1G67310 51.5 2.5e-259 892.1
HCH6g1739 . 12 633 CAMTA Transcription Factor Family AT4G16150 54.9 1.3e-198 690.3
HCH6g1739 . 35 915 CAMTA Transcription Factor Family AT3G16940 55.2 1.8e-268 922.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33550 PF03859 CG-1 1.10E-50 No_clan HCH TF