Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1870 ATGTCCCCTACGGCCCTTACTTACTCACTCACATTTTGCATGCAATCGCAAAATTTTATCATGAATTATAATCCAATCATGCTCTTCTTTATTTTATTTGCATTGCTTGGCTTGGTGCAAGGCCAAGGCACCCGCATTGGCTTCTACTCAAGGACTTGTCCACGAGCTGAATCCATTGTCCAAGCCACTGTCCAATCTCATTTCCGATCCGATCCTTCGATTGCTCCTGGTTTATTGAGAATGCATTTTCATGATTGCTTTGTCCGAGGTTGCGATGCTTCCGTGCTCCTTTCGGGTGCCGATATGGAGAGAACAAGCCCGCCTAACCTTTCTTTGAAAGGCTTTGAAGTCATTGACGATGCCAAGTCTCAACTCGAATCCGTTTGTCCTGGCGTTGTTTCTTGTGCTGATATTCTTACTCTTGCTGCTCGTGATTCTGTGGTTTTGACCAAGGGAATAAGCTGGGGAGTGCCTACTGGGCGTAGAGATGGGACAATTTCAGTGGCTTCAGAAGCTAATAATTTACCTGGATTTACGGATTCTGTTGACGTTCAAAAGAATAAGTTCAGTGCCAAAGGTCTTAATACTCAAGACCTTGTCACTCTAGTTGGTGGACACACCATTGGCACTACACAATGCCAGTTCTTCAGATACAGACTTTTCAACTTCACCACCACAGGAAACGGCGCTGATCCAACCATTGACCCAACTTTTGTGGATCAGCTACGAGCACTTTGCCCAGAAAACGGAGATGGATCACGCAGGGTTGGATTAGACACCGGCAGCGCCGACCGATTCGACACGTCTTTCTTCTCAAACTTAAGGAATGGACGTGGGGTTTTGGAGTCTGATCAAATGCTATGGAATGATACCTCTACTCGCAATTTCGTCCAACGCTTCTTGGGTTTGAGAGGGCTTCTGGGTTTAACATTTAGCGTTGAGTTTGGAAAATCCATGGTTAAAATGAGTAACATTGAAGTCAAATCTGGCAACGTGGGAGAAATTCGAAAAATTTGCTCTGCTGTTAATTAA 1032 44.86 MSPTALTYSLTFCMQSQNFIMNYNPIMLFFILFALLGLVQGQGTRIGFYSRTCPRAESIVQATVQSHFRSDPSIAPGLLRMHFHDCFVRGCDASVLLSGADMERTSPPNLSLKGFEVIDDAKSQLESVCPGVVSCADILTLAARDSVVLTKGISWGVPTGRRDGTISVASEANNLPGFTDSVDVQKNKFSAKGLNTQDLVTLVGGHTIGTTQCQFFRYRLFNFTTTGNGADPTIDPTFVDQLRALCPENGDGSRRVGLDTGSADRFDTSFFSNLRNGRGVLESDQMLWNDTSTRNFVQRFLGLRGLLGLTFSVEFGKSMVKMSNIEVKSGNVGEIRKICSAVN 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 49558800 49560490 + evm.model.ptg000015l.1870 HCH4g1870 544114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1870 343 Pfam Peroxidase 60 300 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1870 343 Gene3D Peroxidase, domain 2 176 322 - -
HCH4g1870 343 FunFam Peroxidase 47 189 - -
HCH4g1870 343 PANTHER PEROXIDASE 25-RELATED 33 339 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
HCH4g1870 343 Gene3D - 48 343 - -
HCH4g1870 343 PRINTS Plant peroxidase signature 317 330 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1870 343 PRINTS Plant peroxidase signature 113 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1870 343 PRINTS Plant peroxidase signature 77 97 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1870 343 PRINTS Plant peroxidase signature 257 272 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1870 343 PRINTS Plant peroxidase signature 151 166 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1870 343 PRINTS Plant peroxidase signature 53 72 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1870 343 PRINTS Plant peroxidase signature 132 142 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1870 343 PRINTS Plant peroxidase signature 197 209 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1870 343 PRINTS Plant peroxidase signature 273 290 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1870 343 CDD secretory_peroxidase 45 342 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH4g1870 343 PRINTS Haem peroxidase superfamily signature 75 89 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1870 343 PRINTS Haem peroxidase superfamily signature 198 213 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1870 343 PRINTS Haem peroxidase superfamily signature 151 163 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1870 343 PRINTS Haem peroxidase superfamily signature 133 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1870 343 PRINTS Haem peroxidase superfamily signature 259 274 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1870 343 ProSitePatterns Peroxidases active site signature. 75 86 IPR019794 GO:0004601(InterPro)
HCH4g1870 343 FunFam Peroxidase 176 322 - -
HCH4g1870 343 ProSiteProfiles Plant heme peroxidase family profile. 43 343 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1870 343 ProSitePatterns Peroxidases proximal heme-ligand signature. 198 208 IPR019793 -
HCH4g1870 343 SUPERFAMILY Heme-dependent peroxidases 45 343 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0749 HCH-Chr2:51161086 HCH4g1870 HCH-Chr4:49558800 8.30E-71 dispersed
HCH4g1870 HCH-Chr4:49558800 HCH8g0835 HCH-Chr8:44859352 1.60E-109 dispersed
HCH4g1870 HCH-Chr4:49558800 HCH4g1871 HCH-Chr4:49611893 9.80E-123 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1870 K00430 - csv:101217567 518.85