Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1871 ATGCATTTTCATGACTGTTTTGTTCAAGGATGTGATGCTTCTGTGCTCATTGAGGGTGCTGATACTGAAAGAACAGCGCTCCCTAATCTTTCTTTGAAAGGTTTTGAGGTCATTGATGATGCCAAGTCTCAGCTTGAAGAAGCTTGCCCTGGAGTTGTCTCCTGTGCTGATATTCTTGCTCTTTCTGCCCGTGATTCTGTCGTTTTGACGAGAGGAACAAGTTGGGCGGTGCCAACTGGACGTAGAGATGGGAGGGTTTCATTGGCTTCAGAGGCAAATTCTCTACCTGGATTTGCTGATTCTGTTGAGGTTCAAAAGAAAGTGTTTATGGACAAAGGTCTCAACACTCAGGACCTTGTGACTCTTCTTGGCGCGCACACCATTGGCACAGCACAATGCAACTTCTTCAGATACAGACTTTACAACTTCACCACCACAGGAGACGCTGATCCAACCATTAACCCATCTTTCGTGAATCAGCTACGAGCACTTTGCCCGGAAAACGGAGATGGATCACGCAGGGTTGGATTAGACACCGGCAGCGCCGATCGATTCGACACGTCTTTCTTCTCCAACTTAAGGAATGGACGTGGGATTTTGGAGTCTGATCAAATGCTGTGGAATGATGCCTCTACTCGCACTTTCGTCCAACGCTATTTGAGAGGGTTCCGGGGTTCAACCTTCAAGGTTCAATTTGGGAACTCCATGGTTAAGATGAGTAATATTCATGTCAAATCTGGTGCTGACGGTGAAATTCGGAAAATTTGCTCTGCGGTTAACTAA 783 46.36 MHFHDCFVQGCDASVLIEGADTERTALPNLSLKGFEVIDDAKSQLEEACPGVVSCADILALSARDSVVLTRGTSWAVPTGRRDGRVSLASEANSLPGFADSVEVQKKVFMDKGLNTQDLVTLLGAHTIGTAQCNFFRYRLYNFTTTGDADPTINPSFVNQLRALCPENGDGSRRVGLDTGSADRFDTSFFSNLRNGRGILESDQMLWNDASTRTFVQRYLRGFRGSTFKVQFGNSMVKMSNIHVKSGADGEIRKICSAVN 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 49611893 49613045 - evm.model.ptg000015l.1871 HCH4g1871 544115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1871 260 PRINTS Plant peroxidase signature 192 209 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1871 260 PRINTS Plant peroxidase signature 71 86 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1871 260 PRINTS Plant peroxidase signature 117 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1871 260 PRINTS Plant peroxidase signature 234 247 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1871 260 PRINTS Plant peroxidase signature 33 46 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1871 260 PRINTS Plant peroxidase signature 52 62 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1871 260 PRINTS Plant peroxidase signature 176 191 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1871 260 Gene3D - 1 260 - -
HCH4g1871 260 PRINTS Haem peroxidase superfamily signature 53 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1871 260 PRINTS Haem peroxidase superfamily signature 178 193 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1871 260 PRINTS Haem peroxidase superfamily signature 118 133 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1871 260 PRINTS Haem peroxidase superfamily signature 71 83 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1871 260 ProSiteProfiles Plant heme peroxidase family profile. 1 260 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1871 260 SUPERFAMILY Heme-dependent peroxidases 1 260 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1871 260 Pfam Peroxidase 1 220 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1871 260 ProSitePatterns Peroxidases proximal heme-ligand signature. 118 128 IPR019793 -
HCH4g1871 260 FunFam Peroxidase 96 239 - -
HCH4g1871 260 Gene3D Peroxidase, domain 2 96 239 - -
HCH4g1871 260 PANTHER PEROXIDASE 25-RELATED 1 256 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
HCH4g1871 260 CDD secretory_peroxidase 1 259 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH4g1871 260 FunFam Peroxidase 9 112 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1871 HCH-Chr4:49611893 HCH8g0835 HCH-Chr8:44859352 6.20E-93 dispersed
HCH4g1870 HCH-Chr4:49558800 HCH4g1871 HCH-Chr4:49611893 9.80E-123 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1871 K00430 - csv:101217567 420.239