Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1874 ATGGCTGCTGCAACTTCTGGTGCTTTGCTTAATGGATTGGGTTCATCCTTCCTTCGTGGAGGTAGGAGAAGCCAGGCCTTGCTTTCAGGAGCCAGAGGTGGTGTCAATGTCGTTGGCTCTCGCAAGCTTGTTATTATGGCAGCTAAGAAATCCTGGCTCCCTGGTGTTCGAGCTGGTGGCAATCTCGTCGACCCAGAATGGCTTGATGGCTCTCTTCCAGGTGACTATGGTTTCGATCCACTCGGCTTAGGGAAGGACCCTGCATTTCTCAAGTGGTATAGAGAGGCAGAGCTGATTCATGGAAGGTGGGCAATGGCTGCAGTTGTTGGGATCTTTGTAGGTCAGGCCTGGAGTGGTATCCCATGGTTTGAAGCGGGTGCAGATCCGCGTGCAATCGCTCCCTTTTCTTTTGGCTCGCTCCTCGGTACTCAGCTGTTGCTGATGGGATGGGTTGAGAGCAAACGATGGGTGGATTTCTTCAACCCGGAGTCGCAATCCGTAGAATGGGCGACACCGTGGTCGAAGACGGCAGAGAATTTCTCCAATGCGACGGGAGAGCAAGGTTATCCGGGTGGGAAATTCTTCGATCCATTGGGAGTAGCAGGAACTCTGAAGGATGGGGTTTATATTCCAGACACTGAGAAGCTTGAGAGATTGAAATTGGCAGAGATAAAGCATGCTCGAATTGCAATGTTAGCAATGCTCATCTTCTACTTTGAAGCTGGACAGGGAAAGACACCTCTTGGTGCTCTTGGATTGTAA 762 50.92 MAAATSGALLNGLGSSFLRGGRRSQALLSGARGGVNVVGSRKLVIMAAKKSWLPGVRAGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSKTAENFSNATGEQGYPGGKFFDPLGVAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 49763631 49764492 - evm.model.ptg000015l.1874 HCH4g1874 544118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1874 253 Gene3D Chlorophyll a/b binding protein domain 65 252 - -
HCH4g1874 253 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 46 251 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
HCH4g1874 253 Pfam Chlorophyll A-B binding protein 65 241 IPR022796 -
HCH4g1874 253 FunFam Chlorophyll a-b binding protein, chloroplastic 65 252 - -
HCH4g1874 253 SUPERFAMILY Chlorophyll a-b binding protein 62 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1874 HCH-Chr4:49763631 HCH8g0587 HCH-Chr8:42695706 5.20E-36 dispersed
HCH4g1874 HCH-Chr4:49763631 HCH9g0770 HCH-Chr9:5266398 1.30E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1874 K08917 - csv:101204705 465.307