Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1880 ATGAGCGGGAGAATTGTTAATGATGAGGCTGTTAGGGATGTAATCGCCGCGGTCGAAAAGCGGGGCGGCAGGGATGAAGTTTTGAAGGTAGGAGTGCCGCCGAGGAAAAAAGTATGGGAGGAGTTGAAATCTGTAGTGAATGAAACGTTCTTCCCGGATCAACCTTTGAGGGCATTCAAATACCAACCAAAAAGAAAGAAGATTGTTTTGTTTGTACAAAGTGTTTTTCCCATATTTGAATGGGGAAGAGAATACAGCTTTGCTAAGTTTAAAGGTGATCTAATTGCTGGACTTACCATTGCTAGTCTTTGTATTCCTCAGGATATTGGATATGCAAAGCTCGCATATTTGCCAGCCGAAAACGGATTATACAGCAGTTTCGTGCCACCACTGGTGTACGCAGCAATGGGAAGCTCAAGAGATATAGCAATAGGACCCGTGGCTGTGGTTTCTCTTTTACTTGGAACTTTGCTGCAGCAAGAATTTGACCCTGTAAAACAAGCAGCTCAATATAAACGTCTTGCTTTTACAGCCACTTTCTTCGCTGGGATTACACAGTTGTCTCTTGGGTTTCTCAGATTGGGATTCTTAATTGACTTTCTTTCTCATGCCGCCATTGTTGGCTTCATGGCTGGAGCTGCCGTTACCATTGCCCTTCAGCAACTTAAAGGCCTCCTTGGTATCGCTGTTTTCACCAAGAAAACCGATATTATTTCTGTCATGCGTTCTGTTTTTAGTAACGCTCACCATGGGTGGAACTGGCAGACTATACTCATTGGCACATCATTTTTGGCTTTTCTTCTGTTTACCAAGTACATTGGGAAGAAAAACAAAAAACTCTTTTGGATTCCAGCAATCGCTCCATTAATATCAGTTATAATCTCAACATTTTGCGTATACATCACTCGTGCAGATAAACATGGAGTTCAGATTGTGAGAAACATAAAGAAGGGAATAAATCCGCCGTCCCTTGATCAGATTTACTTCGAGGGAGACTATGTTATTAAAGGTTTTAAGATTGGTGTGGTTGCTGGTTTGATAGGCTTGACGGAAGCCGTAGCCATCGCAAGAACATTTGCTGACATGAAGGACTACCAAATTAATGGAAATAAAGAAATGATGGCACTTGGAACCATGAATATTGCTGGCTCCATGACTTCTTGCTATGTTGCTACAGGATCATTCTCTCGGTCAGCAGTGAACTATATGGCCGGGTGCAGTACGGCAGTTTCAAACATAGTGATGGCTTGTGTGGTTCTTCTGACTTTGGAACTCATCACTCCACTTTTCAAATACACACCGAATGCCATTCTCGCTTCCATTATCATATGCGCTGTCATTGGCCTCATTGACATTGACGCCGCTCTTCTCTTATGGAAAATTGACAAATTTGACTTCATTGCTTGCATGGGTGCTTTCCTTGGCGTTGTTTTTGATTCTGTTGAAATTGGCCTTTTGATCGCGGTGAGTCTCTCACTATTCAAAATCCTTCTTCAAGTGACAAGACCACGAATTGCTTTGCTTGGGAAGCTGTCAAAGATTGCTATTTTTAGAAACATTTTGCAATACCCAAATGCAAGTAGGGTTCCGGGAGCTTTGATTGTGAGGGTTGATTCTGCAATATATTTCTCTAACGCTAACTATGTAAAAGAAAGGATACTGAGATGGCTTACGGATGAAACAGAAAAATTGGGAGACAAATCTGTTCCCTTCGAGGTTGTAATTGTCGACATGTCCCCGGTCTCTGACATCGATACAAGTGGCATCCATGCACTGGAAGGATTGTATACAAATCTTAAAAAGAAAGATGTTCGGCTTGCATTGGCAAATCCAGGTCCAGTTATCATGGAGAAGCTCTTAGCTGCCAATTTTGAGAAACTGATCGGAGTGGATAACATTTTTCTCACTGTCAATGATGCCGTCAAGACTTATTCACCAAATGCTTTGCTTGATCCTTGA 1959 42.06 MSGRIVNDEAVRDVIAAVEKRGGRDEVLKVGVPPRKKVWEELKSVVNETFFPDQPLRAFKYQPKRKKIVLFVQSVFPIFEWGREYSFAKFKGDLIAGLTIASLCIPQDIGYAKLAYLPAENGLYSSFVPPLVYAAMGSSRDIAIGPVAVVSLLLGTLLQQEFDPVKQAAQYKRLAFTATFFAGITQLSLGFLRLGFLIDFLSHAAIVGFMAGAAVTIALQQLKGLLGIAVFTKKTDIISVMRSVFSNAHHGWNWQTILIGTSFLAFLLFTKYIGKKNKKLFWIPAIAPLISVIISTFCVYITRADKHGVQIVRNIKKGINPPSLDQIYFEGDYVIKGFKIGVVAGLIGLTEAVAIARTFADMKDYQINGNKEMMALGTMNIAGSMTSCYVATGSFSRSAVNYMAGCSTAVSNIVMACVVLLTLELITPLFKYTPNAILASIIICAVIGLIDIDAALLLWKIDKFDFIACMGAFLGVVFDSVEIGLLIAVSLSLFKILLQVTRPRIALLGKLSKIAIFRNILQYPNASRVPGALIVRVDSAIYFSNANYVKERILRWLTDETEKLGDKSVPFEVVIVDMSPVSDIDTSGIHALEGLYTNLKKKDVRLALANPGPVIMEKLLAANFEKLIGVDNIFLTVNDAVKTYSPNALLDP 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 50423243 50431359 - evm.model.ptg000015l.1880 HCH4g1880 544124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1880 652 ProSiteProfiles STAS domain profile. 522 644 IPR002645 -
HCH4g1880 652 Pfam Sulfate permease family 90 471 IPR011547 GO:0016020(InterPro)
HCH4g1880 652 CDD STAS_SulP_like_sulfate_transporter 523 637 - -
HCH4g1880 652 Pfam STAS domain 523 640 IPR002645 -
HCH4g1880 652 FunFam Sulfate transporter 31 502 647 - -
HCH4g1880 652 NCBIfam sulfate permease 77 640 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g1880 652 Gene3D STAS domain 517 647 IPR036513 -
HCH4g1880 652 PANTHER SULFATE TRANSPORTER 62 642 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g1880 652 SUPERFAMILY SpoIIaa-like 524 643 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0076 HCH-Chr13:443930 HCH4g1880 HCH-Chr4:50423243 1.40E-165 dispersed
HCH13g0077 HCH-Chr13:463865 HCH4g1880 HCH-Chr4:50423243 2.80E-259 dispersed
HCH14g0099 HCH-Chr14:18977335 HCH4g1880 HCH-Chr4:50423243 1.80E-141 dispersed
HCH4g1371 HCH-Chr4:10035240 HCH4g1880 HCH-Chr4:50423243 3.80E-171 dispersed
HCH4g1880 HCH-Chr4:50423243 HCH7g1247 HCH-Chr7:45318031 2.30E-189 dispersed
HCH4g1880 HCH-Chr4:50423243 HCH12g0771 HCH-Chr12:4957419 4.90E-256 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1880 K17470 - csv:101202746 1051.2