Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1904 ATGGCGAAGTTGGTTGTCTTTTTGTTTCTCATAATTTTCATCGGTTTCTCGCAAGGCCAGTTGAGATTCGGGTTCTACTCACAAACATGTCCTTCGGCCGAGTCCGTCGTCCGGTCCGTCGTCAGAGATGCCGTTCTTTCCAATGCTCAGGTGGCTGCTGCGTTGCTTAGGCTTCATTTCCATGATTGCTTCGTCGAGGGTTGCGACGGCTCAATTCTGATTGAAAATGGTCCAAATGTTGAGAAAAATGCATTTGCGCATCAAGGGGTTGGAGGTTTCGATGTTATAGAAAGAGCAAAGCAAGCATTGGAAGCTGAATGCCCCAACACGGTTTCCTGTGCCGACATTGTGGCTTTGGCTGCCCGAGATTCTATTTTTATGGCAAATGGACCGGAATACGAGGTTCCAACAGGAAGAAAAGACGGAAGGGTATCGGATCTTCAACTTGCCGATGACATGCCGGATATTAGTGACACCGTTCAGGTTCTGAAATCCAAATTTGCTCACAAAGGGATGACTGACAAGGACTTAGTATTGCTCAGTGCTGCCCACACAATTGGAACCACAGCGTGCTTCTTCATGACGAAAAGATTGTATGAGTTTTTCCCTGGCGGTGGATCTGATCCCGCAATAAATCCAGAGCTTCTGCCGGAACTGAAGGCAAGGTGCCCTCAAAACGGAAATAATAATATAAGATTAGGAATCGACCACGGAAGCGATCAGAAATTCGACGATCATATTCTTAGAAATATCAGAGATGGATTCTCAGTCTTGGCATCTGATGCTCGGCTCAACGACGACGTATCCACCAAATCTGTGATCGACTCTTACTTCGGTCCCCTTACTCCTTTTCTTGGACCATCTTTTGAGGCTGATTATGTAAATTCCATGGTAAGAATGGGCCAAATCGGTATTAAGACAGGTCTTCAAGGGGAGATTCGAACAGTTTGTAAATCTTTCAACTGA 966 45.76 MAKLVVFLFLIIFIGFSQGQLRFGFYSQTCPSAESVVRSVVRDAVLSNAQVAAALLRLHFHDCFVEGCDGSILIENGPNVEKNAFAHQGVGGFDVIERAKQALEAECPNTVSCADIVALAARDSIFMANGPEYEVPTGRKDGRVSDLQLADDMPDISDTVQVLKSKFAHKGMTDKDLVLLSAAHTIGTTACFFMTKRLYEFFPGGGSDPAINPELLPELKARCPQNGNNNIRLGIDHGSDQKFDDHILRNIRDGFSVLASDARLNDDVSTKSVIDSYFGPLTPFLGPSFEADYVNSMVRMGQIGIKTGLQGEIRTVCKSFN 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 52460140 52462532 + evm.model.ptg000015l.1904 HCH4g1904 544148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1904 321 SUPERFAMILY Heme-dependent peroxidases 20 321 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1904 321 Gene3D Peroxidase, domain 2 154 300 - -
HCH4g1904 321 FunFam Peroxidase 154 300 - -
HCH4g1904 321 ProSitePatterns Peroxidases active site signature. 52 63 IPR019794 GO:0004601(InterPro)
HCH4g1904 321 ProSiteProfiles Plant heme peroxidase family profile. 20 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1904 321 PANTHER PEROXIDASE 25-RELATED 13 317 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
HCH4g1904 321 Gene3D - 24 321 - -
HCH4g1904 321 FunFam Peroxidase 24 168 - -
HCH4g1904 321 ProSitePatterns Peroxidases proximal heme-ligand signature. 176 186 IPR019793 -
HCH4g1904 321 PRINTS Plant peroxidase signature 110 120 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1904 321 PRINTS Plant peroxidase signature 250 267 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1904 321 PRINTS Plant peroxidase signature 129 144 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1904 321 PRINTS Plant peroxidase signature 175 187 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1904 321 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1904 321 PRINTS Plant peroxidase signature 234 249 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1904 321 PRINTS Plant peroxidase signature 54 74 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1904 321 PRINTS Plant peroxidase signature 91 104 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1904 321 PRINTS Plant peroxidase signature 30 49 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1904 321 Pfam Peroxidase 37 277 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1904 321 CDD secretory_peroxidase 20 320 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH4g1904 321 PRINTS Haem peroxidase superfamily signature 176 191 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1904 321 PRINTS Haem peroxidase superfamily signature 129 141 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1904 321 PRINTS Haem peroxidase superfamily signature 52 66 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1904 321 PRINTS Haem peroxidase superfamily signature 236 251 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g1904 321 PRINTS Haem peroxidase superfamily signature 111 128 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1904 HCH-Chr4:52460140 HCH8g0835 HCH-Chr8:44859352 3.30E-80 dispersed
HCH4g1904 HCH-Chr4:52460140 HCH2g0749 HCH-Chr2:51161086 1.70E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1904 K00430 - cit:102607425 459.914