Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0011 ATGGGCCTCTCTCTTAACAACCTGATGAAAGGAAACCAAAGCCCTCATATGAGAAAAGAAAAGGCGCTTTCTCATACAACCCTTTTGAACAGAGTAGTAGGCAAATTCGACATGGATTCCGACACCGATCAACACCCAGTCCCTCCCACCACCACCACCACCAGAGTCAGACACAAATGCTGTGCTTGCTACAAGCAATATAAGAAGAAAGAACATCTTATTCAGCATATGAAGGTTTCTTACCACTCTCTTCATCAGCCCAGATGTGGGTTCTGTCAGAAGCACTTCAAATCTTTTCAATCTTTAAGGGAACATCTCAACGGTCCCCTTCCACAATCAAAATGTTCTAAACTCTTCTTTCATCAAGCTTGTCACCTTTGTTTGAGAGTATTTGATACTCCTACTTCTCTCACTCACCACCAACACTTTTGCTCCTTAAATCCACCTCTTTCCCCTGGAACACATCTCTTCCCAACTGATTTGTCTGATTCTTATAATGAAGCCCGTTCTGATAGAGGTCTTGGAGCCATAGCCATGGACTGTCTCATGGTTGGTGCTGGAACTGATGGCTCTTTAGACCTTTGTATTCTGCTATGCCTTGTTGATGAAGATGAGAAATTAATATTTCATACTTTTGTACAACCACCAATACCCATTACTAATTTCAGGCATGAAATCACTGGGTTAAAACAAGAGCATATAAGGGATGCCATGCCTCTGAAACAAGTCCAAGAAAAAGTACTACAAATCTTGCTCAATGGAGAATCCATTGACAGATTAAGATCCGATGGTGGAAGAGCTAGGCTTCTCGTGGGTCATGACTTAGAGCATGATTTGGATTGCTTGAAAATGAATTATCCTGATCATATGTTAAGGGACACTGCAACATATCATCCATTGATGAAAACAAATTTGGTTAGCCATTCACTCAAGTACCTCACTCGAACATATCTAGGGTACGATATTCGGCAGGGTGTGCACGAACCGTATGAAAATTGTGTGTCAGTGATTCGGTTGTACAAGAGAATGCGCAATGTTGATCATGAGGGACAAGTTACTGGAGTGTCAAGTGGTTGTAAAGAGTTCCAGTATGGTGGTAGGGAGAGTCTTGAATCCCATAGTGGTAAAGATCTGGAGAAGATGAGTCCAAATGAGCTTTATGAGAAGTCAAGATCAAACTTCAAGTGCTGGTGTTTGGACTCAAGGCGAGCAATGCAGAATTAA 1224 41.83 MGLSLNNLMKGNQSPHMRKEKALSHTTLLNRVVGKFDMDSDTDQHPVPPTTTTTRVRHKCCACYKQYKKKEHLIQHMKVSYHSLHQPRCGFCQKHFKSFQSLREHLNGPLPQSKCSKLFFHQACHLCLRVFDTPTSLTHHQHFCSLNPPLSPGTHLFPTDLSDSYNEARSDRGLGAIAMDCLMVGAGTDGSLDLCILLCLVDEDEKLIFHTFVQPPIPITNFRHEITGLKQEHIRDAMPLKQVQEKVLQILLNGESIDRLRSDGGRARLLVGHDLEHDLDCLKMNYPDHMLRDTATYHPLMKTNLVSHSLKYLTRTYLGYDIRQGVHEPYENCVSVIRLYKRMRNVDHEGQVTGVSSGCKEFQYGGRESLESHSGKDLEKMSPNELYEKSRSNFKCWCLDSRRAMQN 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 74972 77400 + evm.model.ptg000001l.11 HCH5g0011 544163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0011 407 Gene3D Classic Zinc Finger 36 108 - -
HCH5g0011 407 Gene3D - 175 364 IPR036397 GO:0003676(InterPro)
HCH5g0011 407 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 55 401 IPR047021 GO:0004527(InterPro)|GO:0004527(PANTHER)|GO:0005634(PANTHER)
HCH5g0011 407 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 87 IPR013087 -
HCH5g0011 407 SMART exoiiiendus 175 349 IPR013520 -
HCH5g0011 407 SUPERFAMILY Ribonuclease H-like 177 344 IPR012337 -
HCH5g0011 407 CDD REX4_like 177 341 IPR037431 GO:0006364(InterPro)|GO:0008408(InterPro)
HCH5g0011 407 MobiDBLite consensus disorder prediction 1 20 - -
HCH5g0011 407 ProSitePatterns Zinc finger C2H2 type domain signature. 60 82 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0815 HCH-Chr13:7951720 HCH5g0011 HCH-Chr5:74972 5.30E-92 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0011 K18327 - csv:101206525 509.22