Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0049 ATGACTTCCCACAATTTCCATTTCTTTCTAATATGCTTCATTATATACGCAACGACGAATTCTTCCGCAGAATCCTCGACTTGTTTAATGGTATACAGGGAAGGTGGCGCTCCGGCGGTTTTTCAATCCCCAAAATGCCCTCTTTGGAAGCTCTCCGATTACAAATTTCAATCCGCTACTAACTCTCGTTGTCAAATTTCAATGCATCAAGGTCGAAGAAAGTTTCAGGAAGATCGCGCTCTTTGTGCCCTCGACCTTCGTATTCCTTTCCCTGGTAAAACAGGTCTTACGGAGGTTCCTGTCGGAATTATAGCAGTTTTTGATGGTCATAATGGTGCTGAAGCAAGTGAAATGGCTTCAAAGATTTTGTTGGAATATTTTGTCGTGCATACTTATTTTCTTCTTGATGCCACTTATTCTGGGATTTTTAAGAGATCCATTGAAACATTTTCAAATGAGAGGACACATGGTACCACTTTTCATCAGCTTAGTTGGAATGAGAAAATTAGTAACGGCGATCTGGAACTTGGAAGGATTAAATACTTGCTGCCAGCAGATTTTGATGATGCTTTCCACTTGGCAATATTGAAAGAAGCATTGTTGAGAGCTATACGTGATATTGATAAAACATTTTCCAAGGAAGCACATAAGAATAATCTACTTTCCGGTTCTACTGCTACTATTATATTATTAGCAGATGCGCAAATATTGGTTGCAAACATTGGTGACTCAAAAGCTTTCTTATGCTCTGAAAAGTTTCAGTCACCTGCAGAGGCTAAAGCCACCTTTTTAAGGTTATACAAGAATAAAAGAAATAGTGGGGACTTACGTACAAAGGGCTATGGCAATTCTAAATGGGATTCCTATGATGGACTTGCACATTTTTATGTCAAAGAATTGACAAGAGATCATCATCCAGATAGAGAGGATGAAAGGTCTAGGGTGGAGATTGCTGGGGGTCATGTGGTTGAATGGGGTGGTGTACCTCGGGTAAATGGTCAGTTGGCTATATCCAGAGCTATTGGTGACGTGTCTTTTAAAAGTTATGGGGTTATTTCTGCACCAGAGGTGACTGATTGGCAACCTTTGACCACCAACGATAGCTATTTGGTTGCTTCAACTGATGGCATTTTTGAAAAGCTGAGTTCACAAGATGTATGTGACTTATTGTGGGAAATACAGAATGATGGTATATCAAGTTCTGAACACTCCCCTTCATGTCCCTACTCATTGGCCGATTGCATAGTAAACACTGCCTTTGAAAAGGGCAGTATGGATAACATGGCTGCTATTGTGGTTCCTTTAAGACTTACTGGTTCTTCTCATAAACGACTCTTGGAGCAAAATTTTGTTGCACAGCGAGATTTAAATAATCCTTTTTCTGGACTAGAAAAGTTTATTACAGAGCGTTCAGCCAATGGATTCTCTGCCCATTCTGTGCAATTGGAACATTCTAAATCTCATCCAGTTATGGCCAAGTTCAAGAGATTACTAGTTGAAGGAACACATAAGAATCTAGGATGTTTTTATCTATCCGAGAACCTAGATTCATACAAGGATTACATGTGGAGAAGTCAAAATGAAGAAGAAGAATATTTATGTGATTTGCCTCATGCTCTACCAGAATCCCTCAATCAGCCCTTTGGTGGATCTCTAAATGTGTATAATGACCAAAACTTGTGCTTTCATCTGGGAGTGACTGTTGGAGTTAAAGATCAGTGCTTTAATCCTGAAGGCTTTGCTAGTTTTCTTGGTTTGCTTGAATCAATTCCTTTTCATGATCCTGGTCCAGATTATCAACTATTTGAGCATTCACCTCCTGTTTCCAGGTATGTGTTAAAGAAAAGGTATGGTCGTGGTTCCTATGGTGAAGTATGGCTAGCTTTTCATGGGAACTGCCATCCAGACTTTAGTGCAGTTGGAGAGAATAATAATATTTCATGCAAGTCATTTTTCAGTGACACAAACATTGGAAACTGTAGCGGCTCTTCTAATAGTTCTCAAGCTCATTCTCTGGAGGATAACTTGTTCATCATGAAACGTGTAATGGTTGAAAGAGGGGCTGGAGTCTATTTGAGTGGTTTACGGGAGAAATATTTTGGTGAAATATTTTTGAATGCTTCTACACGTCTTGAAGATGGATTATCAACTGGAATACCAAACTTCATATTTGAAGAGTCGCTTTGGGGGTTTGAAGATCCGTTGGCAAATAATGAAGTAGGAGAAACTGAGCAGTTTGAAACAATATTTCTAAATCAGTTTAGATCGAAGAGAGTTATCTATGAAGGAGGTTTAAATCACATAGTGAGATATGTGGAATCTTTTGAATCTAGATCTAATGAAATATGGCTTGTATTTCATTATGAAGGTATCTCCCTATCAAAGCTGATATATTCTATTGAAGATTCAGATGGTAATGATGATGCAGAAAATGCTGAGCAAAGAAAACACGTGGAACTTTTACGACCTTCTAAATGGTGGTATTGGTTGAAAACAACAGAAGCAGGACAAGAGGAAATGAAAAATTTGATACGCCAGTTGTTGATGGCTCTCAAGTCTTGTCATGACCGCAATATAACTCACAGGGATATTAAACCTGAGAACATGGTGATATGCTTTGAAGATCAGGCAACTGGAAGATGCTTGAATGGAAGTCCAAGGGAAGATCAGAACTTCTCTACTAAAATGCGCATTATTGACTTTGGCAGTGCTATTGATGAATTCACAATTAAAAATTTATATGGATCTACAGGGCCGTCTAGAGCTGAACAAACTTGTGATTATGCTCCTCCCGAAGCCCTGCTTAACTCAAGTTGGTACCAGGGAATGTCAAGAACAACTTTGAAGTATGATATGTGGAGTGTTGGTGTTGTGATGTTGGAATTGATTTTAGGATCACCCAATGTTTTTCAAATAAGTGATTTAACCCGCGTACTTTTGGACCAGCATCTTCAAGGTTGGAATGAAGGCATAAAGGAGCTAGCATACAAGCTTAGATCGTTCATTGAGCTGTGCATTTTAATTCCTGGAAGTTCCTCAAAAAGTAGTCCAAAAAATGATCATCAAGGAAGTTCACCAGCATCCTGGAGATGCTCTGAAGAAGTTTTCTCCCACCAAATAAAGAGTAGAGATCCTCTTAAACTAGGGTTTCCAAATGTTTGGGCTTTACGGTTGGTCCGTCATCTACTGCAATGGGATCCAGAGGATCGTTTGAATGTCGAAGATGCTTTGCAACATCCTTATTTCCACCCTTCTCCGAATGAATGA 3267 39.21 MTSHNFHFFLICFIIYATTNSSAESSTCLMVYREGGAPAVFQSPKCPLWKLSDYKFQSATNSRCQISMHQGRRKFQEDRALCALDLRIPFPGKTGLTEVPVGIIAVFDGHNGAEASEMASKILLEYFVVHTYFLLDATYSGIFKRSIETFSNERTHGTTFHQLSWNEKISNGDLELGRIKYLLPADFDDAFHLAILKEALLRAIRDIDKTFSKEAHKNNLLSGSTATIILLADAQILVANIGDSKAFLCSEKFQSPAEAKATFLRLYKNKRNSGDLRTKGYGNSKWDSYDGLAHFYVKELTRDHHPDREDERSRVEIAGGHVVEWGGVPRVNGQLAISRAIGDVSFKSYGVISAPEVTDWQPLTTNDSYLVASTDGIFEKLSSQDVCDLLWEIQNDGISSSEHSPSCPYSLADCIVNTAFEKGSMDNMAAIVVPLRLTGSSHKRLLEQNFVAQRDLNNPFSGLEKFITERSANGFSAHSVQLEHSKSHPVMAKFKRLLVEGTHKNLGCFYLSENLDSYKDYMWRSQNEEEEYLCDLPHALPESLNQPFGGSLNVYNDQNLCFHLGVTVGVKDQCFNPEGFASFLGLLESIPFHDPGPDYQLFEHSPPVSRYVLKKRYGRGSYGEVWLAFHGNCHPDFSAVGENNNISCKSFFSDTNIGNCSGSSNSSQAHSLEDNLFIMKRVMVERGAGVYLSGLREKYFGEIFLNASTRLEDGLSTGIPNFIFEESLWGFEDPLANNEVGETEQFETIFLNQFRSKRVIYEGGLNHIVRYVESFESRSNEIWLVFHYEGISLSKLIYSIEDSDGNDDAENAEQRKHVELLRPSKWWYWLKTTEAGQEEMKNLIRQLLMALKSCHDRNITHRDIKPENMVICFEDQATGRCLNGSPREDQNFSTKMRIIDFGSAIDEFTIKNLYGSTGPSRAEQTCDYAPPEALLNSSWYQGMSRTTLKYDMWSVGVVMLELILGSPNVFQISDLTRVLLDQHLQGWNEGIKELAYKLRSFIELCILIPGSSSKSSPKNDHQGSSPASWRCSEEVFSHQIKSRDPLKLGFPNVWALRLVRHLLQWDPEDRLNVEDALQHPYFHPSPNE 1088
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 278917 294679 - evm.model.ptg000001l.49 HCH5g0049 544201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0049 1088 SUPERFAMILY PP2C-like 61 435 IPR036457 -
HCH5g0049 1088 Pfam Protein kinase domain 829 1082 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0049 1088 PANTHER PROTEIN PHOSPHATASE 61 434 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH5g0049 1088 SMART PP2C_4 55 433 IPR001932 -
HCH5g0049 1088 SUPERFAMILY Protein kinase-like (PK-like) 764 1084 IPR011009 -
HCH5g0049 1088 SMART serkin_6 611 1082 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0049 1088 CDD PP2Cc 70 435 IPR001932 -
HCH5g0049 1088 Pfam Protein phosphatase 2C 298 428 IPR001932 -
HCH5g0049 1088 Pfam Protein phosphatase 2C 196 251 IPR001932 -
HCH5g0049 1088 Gene3D - 56 439 IPR036457 -
HCH5g0049 1088 ProSiteProfiles Protein kinase domain profile. 611 1082 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0049 1088 ProSiteProfiles PPM-type phosphatase domain profile. 63 435 IPR001932 -
HCH5g0049 1088 ProSitePatterns Serine/Threonine protein kinases active-site signature. 859 871 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH5g0049 1088 Gene3D Transferase(Phosphotransferase) domain 1 828 1083 - -
HCH5g0049 1088 FunFam uncharacterized protein LOC106771884 isoform X8 825 1083 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0049 HCH-Chr5:278917 HCH8g0281 HCH-Chr8:15645117 9.10E-13 dispersed
HCH5g0049 HCH-Chr5:278917 HCH1g0356 HCH-Chr1:50431583 3.00E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81496 PF00069 Pkinase 2.80E-26 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0049 - - - 0.0