Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0064 ATGGGTAGTGATGGGTTTTCAATTCCAATGGAATCTCATTCTCATTCTCAGTCTAATTCTCAGCCATCAGTGTCCAAGAAGAAGAAGACTGCAGTTTCCAGGAGCTGGATTTCTCTAGACCATGAAGGGAATAGTACTATCCTTGACGTGGATAAGTATGCTATTATGCAAAGAGTTCAGATTCATGCCAGAGATCTTCGACTTCTTGATCCTTTATTATCATATCCTTCTACCATCTTAGGCAGAGAAAGAGTTATTGTTCTTAATTTGGAGCATATCAAATCAATAATCACAGCAGATGAGGTACTTCTTAGAGATCCAATGGATGGAAATGTAGTTCCAATAGTTGAAGAATTGCAAAGACGGTTGCCTTCCACAAACTCCATTTGCCAAGGACAAGGTGAAGAAGAAGAGCCTCCTAGCGGCTCCCGAAATGACATGGATGAAAATGAATTTCCATTTGAATTTCGTGCCTTGGAGGTTGCTCTGGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAATTGGAGACCGATACGTATCCAGCGTTGGATGAGCTGACCTCCAAGATTAGCAGTCGTAATTTAGACCGAGTGCGGAAACTGAAGAGTGCAATGACAAGATTGACAAACAGGGTGCAGAAGGTCAGGGATGAACTTGAACAACTTCTTGACGACGACGATGATATGGCCGACCTTTACTTGTCGCGAAAAGTAGATGGATCTTCTCCCCCTGAAAGTGTCTCAGGAACTCCAGTTTGGTTACTTGCCTCTCCTAAAGATGGTTCAAAAATGTCTAAGACAAGTAGGGCAAGTGCAGCTACGATTCGAGGAGATAACGATGTTGAGGAACTAGAAATGCTACTCGAGGCTTATTTTATGCAAATCGAGAGTACATTGAACAAATTAACTACGCTGCGGGAGTACATTGATGACACAGAGGATTACATCAATATTCAGCTTGATAGCCATAGAAACCAACTTATTCAGCTAGAACTCTTTTTGAGTTCTGGGACTGTTTGTTTGTCTCTTTATTCTTTAGTGACTGCAATCTTTGGAATGAATATCCCATATACCTGGAAGGAAGATCATGAGTACATATTCAAATGGGTGGTCATCCTCACAAGTCTAGTTTGTGCATTCATTTACTTGTCAATAAGTTCATATGCACGGTACAAGGGTCTCGTTGGATCGTGA 1200 41.33 MGSDGFSIPMESHSHSQSNSQPSVSKKKKTAVSRSWISLDHEGNSTILDVDKYAIMQRVQIHARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDGNVVPIVEELQRRLPSTNSICQGQGEEEEPPSGSRNDMDENEFPFEFRALEVALEAICSFLDARTRELETDTYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMADLYLSRKVDGSSPPESVSGTPVWLLASPKDGSKMSKTSRASAATIRGDNDVEELEMLLEAYFMQIESTLNKLTTLREYIDDTEDYINIQLDSHRNQLIQLELFLSSGTVCLSLYSLVTAIFGMNIPYTWKEDHEYIFKWVVILTSLVCAFIYLSISSYARYKGLVGS 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 389426 392576 + evm.model.ptg000001l.64 HCH5g0064 544216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0064 399 MobiDBLite consensus disorder prediction 1 27 - -
HCH5g0064 399 CDD Mrs2_Mfm1p-like 36 396 IPR039204 -
HCH5g0064 399 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 335 385 IPR045863 -
HCH5g0064 399 Gene3D Magnesium transport protein CorA, transmembrane region 113 329 - -
HCH5g0064 399 MobiDBLite consensus disorder prediction 9 27 - -
HCH5g0064 399 FunFam Magnesium transporter MRS2-1 24 107 - -
HCH5g0064 399 Coils Coil 200 227 - -
HCH5g0064 399 Gene3D - 20 107 - -
HCH5g0064 399 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 16 396 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
HCH5g0064 399 Pfam Magnesium transporter MRS2-like 39 241 - -
HCH5g0064 399 Pfam Magnesium transporter MRS2-like 266 326 - -
HCH5g0064 399 MobiDBLite consensus disorder prediction 124 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0064 K16075 - - csv:101220452 626.706
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0836 HCH-Chr11:39144320 HCH5g0064 HCH-Chr5:389426 2.50E-78 dispersed
HCH5g0064 HCH-Chr5:389426 HCH7g0748 HCH-Chr7:10192029 1.50E-74 dispersed
HCH4g0153 HCH-Chr4:850633 HCH5g0064 HCH-Chr5:389426 6.10E-73 transposed
HCH6g0297 HCH-Chr6:4354754 HCH5g0064 HCH-Chr5:389426 9.30E-89 transposed
HCH5g0064 HCH-Chr5:389426 HCH6g1542 HCH-Chr6:48822187 2.60E-151 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH6g0297 . 1 449 MRS2 Gene Family AT1G16010 83.1 2.3e-204 708.4
HCH4g0153 . 6 383 MRS2 Gene Family AT1G16010 55.8 1.6e-112 403.3
HCH5g0064 . 27 386 MRS2 Gene Family AT1G16010 50.3 4.6e-88 322.0
HCH6g1542 . 1 366 MRS2 Gene Family AT5G64560 81.9 1.6e-161 565.8
HCH5g0064 . 1 372 MRS2 Gene Family AT5G64560 70.7 8.6e-136 480.3
HCH7g0748 . 36 497 MRS2 Gene Family AT3G19640 67.9 4.1e-159 558.1
HCH11g0836 . 1 449 MRS2 Gene Family AT3G58970 64.6 1.6e-146 516.2
HCH4g0153 . 6 383 MRS2 Gene Family AT2G03620 71.4 1.1e-142 503.4
HCH6g0297 . 13 449 MRS2 Gene Family AT2G03620 52.5 2.5e-112 402.5
HCH6g1542 . 1 328 MRS2 Gene Family AT5G09690 76.2 6.2e-127 450.7
HCH5g0064 . 1 334 MRS2 Gene Family AT5G09690 66.7 4.6e-114 407.9
HCH6g0297 . 39 385 MRS2 Gene Family AT5G09690 50.4 4.1e-78 288.5
HCH6g1542 . 12 288 MRS2 Gene Family AT5G09720 67.0 8.5e-91 330.5
HCH5g0064 . 33 294 MRS2 Gene Family AT5G09720 62.2 4.9e-78 288.1
HCH6g0297 . 1 449 MRS2 Gene Family AT1G80900 81.8 1.3e-199 692.6
HCH4g0153 . 6 383 MRS2 Gene Family AT1G80900 54.8 5.0e-111 398.3
HCH3g1132 . 117 456 MRS2 Gene Family AT5G22830 82.6 1.3e-157 553.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58