Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH5g0064 | ATGGGTAGTGATGGGTTTTCAATTCCAATGGAATCTCATTCTCATTCTCAGTCTAATTCTCAGCCATCAGTGTCCAAGAAGAAGAAGACTGCAGTTTCCAGGAGCTGGATTTCTCTAGACCATGAAGGGAATAGTACTATCCTTGACGTGGATAAGTATGCTATTATGCAAAGAGTTCAGATTCATGCCAGAGATCTTCGACTTCTTGATCCTTTATTATCATATCCTTCTACCATCTTAGGCAGAGAAAGAGTTATTGTTCTTAATTTGGAGCATATCAAATCAATAATCACAGCAGATGAGGTACTTCTTAGAGATCCAATGGATGGAAATGTAGTTCCAATAGTTGAAGAATTGCAAAGACGGTTGCCTTCCACAAACTCCATTTGCCAAGGACAAGGTGAAGAAGAAGAGCCTCCTAGCGGCTCCCGAAATGACATGGATGAAAATGAATTTCCATTTGAATTTCGTGCCTTGGAGGTTGCTCTGGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAATTGGAGACCGATACGTATCCAGCGTTGGATGAGCTGACCTCCAAGATTAGCAGTCGTAATTTAGACCGAGTGCGGAAACTGAAGAGTGCAATGACAAGATTGACAAACAGGGTGCAGAAGGTCAGGGATGAACTTGAACAACTTCTTGACGACGACGATGATATGGCCGACCTTTACTTGTCGCGAAAAGTAGATGGATCTTCTCCCCCTGAAAGTGTCTCAGGAACTCCAGTTTGGTTACTTGCCTCTCCTAAAGATGGTTCAAAAATGTCTAAGACAAGTAGGGCAAGTGCAGCTACGATTCGAGGAGATAACGATGTTGAGGAACTAGAAATGCTACTCGAGGCTTATTTTATGCAAATCGAGAGTACATTGAACAAATTAACTACGCTGCGGGAGTACATTGATGACACAGAGGATTACATCAATATTCAGCTTGATAGCCATAGAAACCAACTTATTCAGCTAGAACTCTTTTTGAGTTCTGGGACTGTTTGTTTGTCTCTTTATTCTTTAGTGACTGCAATCTTTGGAATGAATATCCCATATACCTGGAAGGAAGATCATGAGTACATATTCAAATGGGTGGTCATCCTCACAAGTCTAGTTTGTGCATTCATTTACTTGTCAATAAGTTCATATGCACGGTACAAGGGTCTCGTTGGATCGTGA | 1200 | 41.33 | MGSDGFSIPMESHSHSQSNSQPSVSKKKKTAVSRSWISLDHEGNSTILDVDKYAIMQRVQIHARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDGNVVPIVEELQRRLPSTNSICQGQGEEEEPPSGSRNDMDENEFPFEFRALEVALEAICSFLDARTRELETDTYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMADLYLSRKVDGSSPPESVSGTPVWLLASPKDGSKMSKTSRASAATIRGDNDVEELEMLLEAYFMQIESTLNKLTTLREYIDDTEDYINIQLDSHRNQLIQLELFLSSGTVCLSLYSLVTAIFGMNIPYTWKEDHEYIFKWVVILTSLVCAFIYLSISSYARYKGLVGS | 399 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 389426 | 392576 | + | evm.model.ptg000001l.64 | HCH5g0064 | 544216 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH5g0064 | 399 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| HCH5g0064 | 399 | CDD | Mrs2_Mfm1p-like | 36 | 396 | IPR039204 | - | |
| HCH5g0064 | 399 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 335 | 385 | IPR045863 | - | |
| HCH5g0064 | 399 | Gene3D | Magnesium transport protein CorA, transmembrane region | 113 | 329 | - | - | |
| HCH5g0064 | 399 | MobiDBLite | consensus disorder prediction | 9 | 27 | - | - | |
| HCH5g0064 | 399 | FunFam | Magnesium transporter MRS2-1 | 24 | 107 | - | - | |
| HCH5g0064 | 399 | Coils | Coil | 200 | 227 | - | - | |
| HCH5g0064 | 399 | Gene3D | - | 20 | 107 | - | - | |
| HCH5g0064 | 399 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 16 | 396 | IPR039204 | GO:0015095(PANTHER)|GO:0015693(PANTHER) | |
| HCH5g0064 | 399 | Pfam | Magnesium transporter MRS2-like | 39 | 241 | - | - | |
| HCH5g0064 | 399 | Pfam | Magnesium transporter MRS2-like | 266 | 326 | - | - | |
| HCH5g0064 | 399 | MobiDBLite | consensus disorder prediction | 124 | 149 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH11g0836 | HCH-Chr11:39144320 | HCH5g0064 | HCH-Chr5:389426 | 2.50E-78 | dispersed | |
| HCH5g0064 | HCH-Chr5:389426 | HCH7g0748 | HCH-Chr7:10192029 | 1.50E-74 | dispersed | |
| HCH4g0153 | HCH-Chr4:850633 | HCH5g0064 | HCH-Chr5:389426 | 6.10E-73 | transposed | |
| HCH6g0297 | HCH-Chr6:4354754 | HCH5g0064 | HCH-Chr5:389426 | 9.30E-89 | transposed | |
| HCH5g0064 | HCH-Chr5:389426 | HCH6g1542 | HCH-Chr6:48822187 | 2.60E-151 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH5g0064 | K16075 | - | csv:101220452 | 626.706 |