Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH5g0065 | ATGGCGAATCAGATTGTTAAAGTAAAGAGAGAGACGATTATCGCATGCATAACTTGCCCTCTCTGTAATAAGCTATTGAAAGAAGCTACTACTATTTCTGAATGCCTTCATACGTTTTGCAGGAAGTGCATTTATGATAAGATTTCAGACGAAGAACTAGAAAGCTGTCCAGTATGTAATATTGACCTGGGCTGTGTCCCATTGGAGAAATTAAGGCCAGACCACAATCTTCAAGATTTGAGAGCCAAGATTTTCCCTAGTAAAAGGAGAAAAGTTATAACGCCTGAAGTTACTCCTGTTATATTACCAGTTAGAAGGAAGGAGAGATCACTTTCGTCATTGGTGGTCAATAGTCCTAGAGTGTCAAACCATGCTACCACAACTGGAAGAAGGACAGCAGCTGCTGCAAGAATTGCTTCTCTTTTGCGAGGACCAAGGATTCCTGCTGAGAAACGCATAAAGAAAGAGGATGATTCTGCCGAAGATCATTCAGAGAGCTCAAGTTCCCTTGGGACACCAGATAAATTCAATCAGAATAAAAGGACGGATTCCAGTCCTACCAAGTCTACCACATCTATTCGAAATAAAGAAGTGGAGAATGGTGTTGAATCACTGGAAGGGAACTTGGATATCTGGAAACCTTTAAATTATTTAGTTGAAGTTGCAAATAGGAGTAAATCTTTCAAATCTAATTCACAAGGATTTGATGCCAAAGTTGAGTCCGCAGATGTCAATGGTACTGAAGCTCAAGCCAGCAAGTCTAGAAATAGGGAAAGCAAACGCAAGCTAAAACGTGAGAATGAAAAAGCTAGAATGGACCTTGTATCTTCAGAGACTGAAAGACCGAAGAAACTGCGTAGGGTCCGCCAGAAAAGGGAATCGGTTTTGGGGGACTCCAACATCACACCCCAGATTGTGTTGGATGCTGCTAGTGCTAGGCTTGAAAGAAGAGCTTGTCCGATTTGGCTCTCACTGATTGCTTCTGACCAGGAAGGAGATGCATCATTGCCTCAAATTCCTGCTAGGTACTTGAGAATAAAGGATGGAAACTTGCAGGTTTCATTCGTCCAAAAGTACCTGATGAGAAAGCTAGATCTTCCAACTGAATCCGAGGTTGAAGTCAAGTGTATGGGACACCCAGTAGTGCCTACATTGGATTTGCACAGTTTAGTTGATTTATGGCTACAAACAGCATCAACCTCTCAAAAGATCCCCGCATCAATCGGTTCCTCTGCCGAGGACTTCGTTATGGTTCTTTACTACGCTAGAAAGATACCGCTTTCTTGA | 1287 | 42.19 | MANQIVKVKRETIIACITCPLCNKLLKEATTISECLHTFCRKCIYDKISDEELESCPVCNIDLGCVPLEKLRPDHNLQDLRAKIFPSKRRKVITPEVTPVILPVRRKERSLSSLVVNSPRVSNHATTTGRRTAAAARIASLLRGPRIPAEKRIKKEDDSAEDHSESSSSLGTPDKFNQNKRTDSSPTKSTTSIRNKEVENGVESLEGNLDIWKPLNYLVEVANRSKSFKSNSQGFDAKVESADVNGTEAQASKSRNRESKRKLKRENEKARMDLVSSETERPKKLRRVRQKRESVLGDSNITPQIVLDAASARLERRACPIWLSLIASDQEGDASLPQIPARYLRIKDGNLQVSFVQKYLMRKLDLPTESEVEVKCMGHPVVPTLDLHSLVDLWLQTASTSQKIPASIGSSAEDFVMVLYYARKIPLS | 428 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 394944 | 398740 | + | evm.model.ptg000001l.65 | HCH5g0065 | 544217 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH5g0065 | 428 | SMART | ring_2 | 19 | 59 | IPR001841 | - | |
HCH5g0065 | 428 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 111 | IPR013083 | - | |
HCH5g0065 | 428 | ProSitePatterns | Zinc finger RING-type signature. | 35 | 44 | IPR017907 | - | |
HCH5g0065 | 428 | CDD | RING-HC_PCGF | 17 | 60 | - | - | |
HCH5g0065 | 428 | MobiDBLite | consensus disorder prediction | 146 | 196 | - | - | |
HCH5g0065 | 428 | SUPERFAMILY | RING/U-box | 15 | 84 | - | - | |
HCH5g0065 | 428 | MobiDBLite | consensus disorder prediction | 147 | 164 | - | - | |
HCH5g0065 | 428 | ProSiteProfiles | Zinc finger RING-type profile. | 19 | 60 | IPR001841 | - | |
HCH5g0065 | 428 | Gene3D | - | 304 | 408 | - | - | |
HCH5g0065 | 428 | Coils | Coil | 249 | 280 | - | - | |
HCH5g0065 | 428 | MobiDBLite | consensus disorder prediction | 165 | 196 | - | - | |
HCH5g0065 | 428 | Pfam | Zinc finger, C3HC4 type (RING finger) | 19 | 59 | - | - | |
HCH5g0065 | 428 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE DRIP1 | 4 | 424 | IPR044807 | GO:0004842(InterPro) | |
HCH5g0065 | 428 | MobiDBLite | consensus disorder prediction | 239 | 291 | - | - | |
HCH5g0065 | 428 | MobiDBLite | consensus disorder prediction | 253 | 284 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g0312 | HCH-Chr2:42960894 | HCH5g0065 | HCH-Chr5:394944 | 4.40E-12 | dispersed | |
HCH5g0065 | HCH-Chr5:394944 | HCH5g1168 | HCH-Chr5:39161418 | 1.70E-15 | dispersed | |
HCH10g0722 | HCH-Chr10:6706035 | HCH5g0065 | HCH-Chr5:394944 | 1.90E-113 | wgd | |
HCH5g0065 | HCH-Chr5:394944 | HCH7g1279 | HCH-Chr7:45717841 | 1.60E-69 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH5g0065 | K16277 | - | csv:101220692 | 669.463 |