Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0065 ATGGCGAATCAGATTGTTAAAGTAAAGAGAGAGACGATTATCGCATGCATAACTTGCCCTCTCTGTAATAAGCTATTGAAAGAAGCTACTACTATTTCTGAATGCCTTCATACGTTTTGCAGGAAGTGCATTTATGATAAGATTTCAGACGAAGAACTAGAAAGCTGTCCAGTATGTAATATTGACCTGGGCTGTGTCCCATTGGAGAAATTAAGGCCAGACCACAATCTTCAAGATTTGAGAGCCAAGATTTTCCCTAGTAAAAGGAGAAAAGTTATAACGCCTGAAGTTACTCCTGTTATATTACCAGTTAGAAGGAAGGAGAGATCACTTTCGTCATTGGTGGTCAATAGTCCTAGAGTGTCAAACCATGCTACCACAACTGGAAGAAGGACAGCAGCTGCTGCAAGAATTGCTTCTCTTTTGCGAGGACCAAGGATTCCTGCTGAGAAACGCATAAAGAAAGAGGATGATTCTGCCGAAGATCATTCAGAGAGCTCAAGTTCCCTTGGGACACCAGATAAATTCAATCAGAATAAAAGGACGGATTCCAGTCCTACCAAGTCTACCACATCTATTCGAAATAAAGAAGTGGAGAATGGTGTTGAATCACTGGAAGGGAACTTGGATATCTGGAAACCTTTAAATTATTTAGTTGAAGTTGCAAATAGGAGTAAATCTTTCAAATCTAATTCACAAGGATTTGATGCCAAAGTTGAGTCCGCAGATGTCAATGGTACTGAAGCTCAAGCCAGCAAGTCTAGAAATAGGGAAAGCAAACGCAAGCTAAAACGTGAGAATGAAAAAGCTAGAATGGACCTTGTATCTTCAGAGACTGAAAGACCGAAGAAACTGCGTAGGGTCCGCCAGAAAAGGGAATCGGTTTTGGGGGACTCCAACATCACACCCCAGATTGTGTTGGATGCTGCTAGTGCTAGGCTTGAAAGAAGAGCTTGTCCGATTTGGCTCTCACTGATTGCTTCTGACCAGGAAGGAGATGCATCATTGCCTCAAATTCCTGCTAGGTACTTGAGAATAAAGGATGGAAACTTGCAGGTTTCATTCGTCCAAAAGTACCTGATGAGAAAGCTAGATCTTCCAACTGAATCCGAGGTTGAAGTCAAGTGTATGGGACACCCAGTAGTGCCTACATTGGATTTGCACAGTTTAGTTGATTTATGGCTACAAACAGCATCAACCTCTCAAAAGATCCCCGCATCAATCGGTTCCTCTGCCGAGGACTTCGTTATGGTTCTTTACTACGCTAGAAAGATACCGCTTTCTTGA 1287 42.19 MANQIVKVKRETIIACITCPLCNKLLKEATTISECLHTFCRKCIYDKISDEELESCPVCNIDLGCVPLEKLRPDHNLQDLRAKIFPSKRRKVITPEVTPVILPVRRKERSLSSLVVNSPRVSNHATTTGRRTAAAARIASLLRGPRIPAEKRIKKEDDSAEDHSESSSSLGTPDKFNQNKRTDSSPTKSTTSIRNKEVENGVESLEGNLDIWKPLNYLVEVANRSKSFKSNSQGFDAKVESADVNGTEAQASKSRNRESKRKLKRENEKARMDLVSSETERPKKLRRVRQKRESVLGDSNITPQIVLDAASARLERRACPIWLSLIASDQEGDASLPQIPARYLRIKDGNLQVSFVQKYLMRKLDLPTESEVEVKCMGHPVVPTLDLHSLVDLWLQTASTSQKIPASIGSSAEDFVMVLYYARKIPLS 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 394944 398740 + evm.model.ptg000001l.65 HCH5g0065 544217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0065 428 SMART ring_2 19 59 IPR001841 -
HCH5g0065 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 111 IPR013083 -
HCH5g0065 428 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
HCH5g0065 428 CDD RING-HC_PCGF 17 60 - -
HCH5g0065 428 MobiDBLite consensus disorder prediction 146 196 - -
HCH5g0065 428 SUPERFAMILY RING/U-box 15 84 - -
HCH5g0065 428 MobiDBLite consensus disorder prediction 147 164 - -
HCH5g0065 428 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
HCH5g0065 428 Gene3D - 304 408 - -
HCH5g0065 428 Coils Coil 249 280 - -
HCH5g0065 428 MobiDBLite consensus disorder prediction 165 196 - -
HCH5g0065 428 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
HCH5g0065 428 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 424 IPR044807 GO:0004842(InterPro)
HCH5g0065 428 MobiDBLite consensus disorder prediction 239 291 - -
HCH5g0065 428 MobiDBLite consensus disorder prediction 253 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0312 HCH-Chr2:42960894 HCH5g0065 HCH-Chr5:394944 4.40E-12 dispersed
HCH5g0065 HCH-Chr5:394944 HCH5g1168 HCH-Chr5:39161418 1.70E-15 dispersed
HCH10g0722 HCH-Chr10:6706035 HCH5g0065 HCH-Chr5:394944 1.90E-113 wgd
HCH5g0065 HCH-Chr5:394944 HCH7g1279 HCH-Chr7:45717841 1.60E-69 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0065 K16277 - csv:101220692 669.463