Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0068 ATGGAAGAGATTGAGGAAGCTAACAAAGCAGCCATTGAGAGCTGCCATAGAGTTTTGAATCTACTGGCTCAGCCCTCAGATCAAATTCATCTTAGGAATTTGAAGTTAGAAACTGGGGAAACTGTTTTTAAGTTCAAGAAAGTGATTTCTCTTTTAAATACTGGATTGGGTCATGCAAGAGTTAGAAAGCTGAATAAGTTTAATATCCCTTTGCCTCAAAATATTCTCTTAGATAAACCAAATTCCATAAAAGAACATCAAAACCAGAGTCTGCAGATTTTTCAGTCTAGATTTCCTGAAAATATGATTAGAGATAGTAAAGTTTCTGTTTTCATGGGAAACCCAACTTTGAAACTGGGTTCAAATGAGATGAACTCTCAGTCTTTTCAGCTGCCTAGACAACAAGCTCCATCTCCACACTTTAGCTTTCCTCATCAGCAGCAGCAGCAGCAGCAACAACAACAAGAAAGGATTTTGGCACAGCAGAAAGCTATGAAACAACAAGCGGAAATGATGTTTCTTAGGAGTAATAGTGGTATTAATCTGAATTTTGATAGCCCGAATTGCACAATGACAATGTCATCAGCGAGGTCTTTCGTTTCTTCATTGAGTATGGATGGGAGTGTGGCAAATTTGAATGGAAACTCGTTCCATTTGATCGGAGCAGCGAGTTCTGCGGATCAGAGTCTGCACAATAATAAGAGGAAGTTTAATGGAAGGGGAGATGATGGGAGTTTGAAATGTGGAAGTACCGGTAAATGTCACTGCTCAAAGAAGAGGAAACACAGGATAAAGAGATCAATTAAAGTCCCTGCCATAAGTGACAAGCTTGCAGATATTCCTTCTGATGATTATTCATGGAGGAAATATGGGCAGAAGCCAATAAAGGGTTCTCCTCACCCAAGGGGTTACTACAAATGCAGCAGCATGAGAGGTTGTCCAGCACGAAAGCACGTCGAGAGGTGCTTAGAAGACTCATCGATGCTTATTGTTACCTATGAAGGAGAACACAATCACCCCAAAATGTCCTCTCATTCTACAAACACTTAG 1050 40.19 MEEIEEANKAAIESCHRVLNLLAQPSDQIHLRNLKLETGETVFKFKKVISLLNTGLGHARVRKLNKFNIPLPQNILLDKPNSIKEHQNQSLQIFQSRFPENMIRDSKVSVFMGNPTLKLGSNEMNSQSFQLPRQQAPSPHFSFPHQQQQQQQQQQERILAQQKAMKQQAEMMFLRSNSGINLNFDSPNCTMTMSSARSFVSSLSMDGSVANLNGNSFHLIGAASSADQSLHNNKRKFNGRGDDGSLKCGSTGKCHCSKKRKHRIKRSIKVPAISDKLADIPSDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDSSMLIVTYEGEHNHPKMSSHSTNT 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 412196 414129 + evm.model.ptg000001l.68 HCH5g0068 544220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0068 349 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 346 IPR044810 GO:0003700(InterPro)
HCH5g0068 349 SUPERFAMILY WRKY DNA-binding domain 279 341 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g0068 349 Pfam Plant zinc cluster domain 242 279 IPR018872 -
HCH5g0068 349 ProSiteProfiles WRKY domain profile. 276 342 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g0068 349 SMART WRKY_cls 281 341 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g0068 349 FunFam WRKY transcription factor 65 265 342 - -
HCH5g0068 349 Gene3D WRKY domain 266 341 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g0068 349 Pfam WRKY DNA -binding domain 283 340 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g0068 349 MobiDBLite consensus disorder prediction 123 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0068 HCH-Chr5:412196 HCH5g1320 HCH-Chr5:50115127 7.00E-108 dispersed
HCH5g0068 HCH-Chr5:412196 HCH12g0602 HCH-Chr12:3532882 5.30E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33559 PF03106 WRKY 3.50E-26 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0068 - - - 0.0