Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0078 ATGACAGGCACTGGTTCTCCATGTGGAGCCTGTAAATTCTTGAGAAGAAAATGTGTCAGAGGTTGTGTTTTTGCACCTTATTTCTGCCATGAACAAGGTGCTACCCATTTTGCTGCCATTCACAAGGTTTTTGGTGCCAGCAATGTCTCTAAGCTTCTTGCTCGTCTTCCACACTCCGAGCGTTGCGAGGCCGCTGTCACCATTTCTTATGAAGCTCAAGCTCGCCTTCAAGATCCCATCTATGGCTGTGTTTCCCATATCTTTGCTCTCCAACAACAGGTTGTGAATCTTCAAGCACAACTTGCTTCTCTCAAAGAACAAGCAGTAGAAAGTGTTATGAAAAACTCTGGCAATGGAAGCACCAATGAGAAAATTTGCAGAAAACTTCCTTCTCATCCCCAAGATCTCCATAATTGGTTCCATTCAGAGCAAATGAATGTAACACCCGAGTTCAATCCGAATCCGACTCCGACTCCGACTCCGACCCAACACTCTGCTGATTCCAACAATCCATATTATGATGAGAATTACAATTACCGAATTATGACTAACAATTCACAGTGTGATGGAAATTCAAATTACGATGCTCATAATTTAGCCAAGATAGAGGAAAATGGATCTTATAGAAGCTATGAAGAAACGTATTCTCTTGATCAAATCCAATATTCAAACGGCCATCAATGGAGTTCTTTCAGTGATTCCGATGATCTTCAATCGGTTGCTTTTGGCAATACTAGACATTGGTGA 747 41.77 MTGTGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPHSERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLKEQAVESVMKNSGNGSTNEKICRKLPSHPQDLHNWFHSEQMNVTPEFNPNPTPTPTPTQHSADSNNPYYDENYNYRIMTNNSQCDGNSNYDAHNLAKIEENGSYRSYEETYSLDQIQYSNGHQWSSFSDSDDLQSVAFGNTRHW 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 500804 501813 + evm.model.ptg000001l.78 HCH5g0078 544230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0078 248 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
HCH5g0078 248 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
HCH5g0078 248 Coils Coil 87 107 - -
HCH5g0078 248 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 240 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
HCH5g0078 248 MobiDBLite consensus disorder prediction 150 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1199 HCH-Chr13:39179676 HCH5g0078 HCH-Chr5:500804 6.50E-37 dispersed
HCH5g0078 HCH-Chr5:500804 HCH5g1307 HCH-Chr5:49447591 5.60E-51 dispersed
HCH5g0078 HCH-Chr5:500804 HCH5g0079 HCH-Chr5:506163 6.20E-42 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33561 PF03195 LOB 4.10E-36 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0078 K13945 - csv:101214764 332.028