Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0079 ATGGCGTCGGCAGGATCGTCGAATGAAAGTAGCGGTAGCGGCAGCGGCTCACCGTGCGGAGCATGCAAGTTTCTACGGCGGAAATGCATACCGGACTGCATTTTCGCTCCCTATTTTTGCTCGGAGCAAGGTCCGGCACGATTCGCGGCTATTCATAAGGTATTTGGTGCAAGTAATGTGGCAAAGTTGCTTTTGCATGTTCCTGTTCATGATCGCTGTGAGGCCGTTGTTACTATTGCTTATGAAGCTCAAGCTAGGATTCGAGATCCGGTTTATGGCTGCGTTGCTCATATTTTCGCTCTCCAACAGCAGGTGTCATATTTGCAATCACAACTGATGCAAGCCAAAGCTCAACTTACTCAAAACCTGATAGATTCAGGAAATATGGAGATTCAATGGACAGAGAATCACAATCTCCAAGGTGGAATGATGCCAAATTCCTTCTCAAGTTATCAGATAAACCCTGTTTCCCCACAAAGCTCTATTGAATCCATTGACAATCACTACAATGAAGCAATGATGAACATGCAGGAAACACAAACATCAGAATTTCAGTTTCAACCCTTTTCTAGGAAAAGACTTGCCTGCCATGGCGATCTTGGGGAGCTCCAAGCTTTGGCCCTTAGAATGATGAGAGACTAA 642 45.48 MASAGSSNESSGSGSGSPCGACKFLRRKCIPDCIFAPYFCSEQGPARFAAIHKVFGASNVAKLLLHVPVHDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVSYLQSQLMQAKAQLTQNLIDSGNMEIQWTENHNLQGGMMPNSFSSYQINPVSPQSSIESIDNHYNEAMMNMQETQTSEFQFQPFSRKRLACHGDLGELQALALRMMRD 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 506163 507079 - evm.model.ptg000001l.79 HCH5g0079 544231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0079 213 ProSiteProfiles LOB domain profile. 17 119 IPR004883 -
HCH5g0079 213 PANTHER LOB DOMAIN CONTAINING PROTEIN 14 181 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
HCH5g0079 213 Pfam Lateral organ boundaries (LOB) domain 18 116 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1200 HCH-Chr13:39227638 HCH5g0079 HCH-Chr5:506163 1.60E-42 dispersed
HCH5g0079 HCH-Chr5:506163 HCH5g1304 HCH-Chr5:49201071 1.80E-58 dispersed
HCH5g0078 HCH-Chr5:500804 HCH5g0079 HCH-Chr5:506163 6.20E-42 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33562 PF03195 LOB 2.90E-37 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0079 K13944 - mdm:114824919 270.396