Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0091 ATGGATTACTCCTCTTACTTTTCATTCTCGGATTCAGGATTCTCAAATGAATCATCTTCATTTGGTTCCCAAGAAAATGAATCCTTCTCATGGAGTGAGTTTTTCTCAATTCAAGACTCCCTGGAAAATGATTTTCTCAGCAGCCAAACATCAGAAGCCAATTCCCAGGTGATGGTTAAGGAAGAAATATCAGAAGTAACGTCCAATATTGAAGAAGAGAAACCGAGAAAGACGGTGGGGGTGGCGGCGGAAGAGAAGAGTTATAGAGGGGTAAGACGGAGGCCGTGGGGGAAGTATGCGGCGGAGATAAGGGATTCAACGAGGCATGGAGTTAGGGTTTGGCTTGGAACTTTTGATAGTGCTGAAGCAGCTGCTTTGGCTTATGATCAAGCTGCATTTTCAATGAGAGGTTCATTGGCAGTGTTGAATTTTCCTGTGGAAACAGTTAGAGAATCACTCCGAGATATTAAGTGGCATTTCGAAGACGGGTGCTCCCCGGTCGTGGCTTTGAAGAGGAAACACTCCTTGAGAAGGAAGTCGGCAGCGGCAGCGACCGCCGCTGCAGCCTCGATGAAGAAGAAGAAGAAGAATGTGGTAGTTTTAGAGGATTTGGGGACTGAGTATTTGGAGGAACTGTTGATGCTTAGTTCTTCTTCATATGAGAGTTTTAGTCCTTTGTGA 681 45.23 MDYSSYFSFSDSGFSNESSSFGSQENESFSWSEFFSIQDSLENDFLSSQTSEANSQVMVKEEISEVTSNIEEEKPRKTVGVAAEEKSYRGVRRRPWGKYAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGSLAVLNFPVETVRESLRDIKWHFEDGCSPVVALKRKHSLRRKSAAAATAAAASMKKKKKNVVVLEDLGTEYLEELLMLSSSSYESFSPL 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 572962 573642 + evm.model.ptg000001l.91 HCH5g0091 544243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0091 226 PANTHER DNA-BINDING DOMAIN 47 188 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
HCH5g0091 226 Gene3D AP2/ERF domain 86 147 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0091 226 PRINTS Ethylene responsive element binding protein signature 88 99 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0091 226 PRINTS Ethylene responsive element binding protein signature 111 127 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0091 226 ProSiteProfiles AP2/ERF domain profile. 87 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0091 226 FunFam Ethylene-responsive transcription factor 2 86 147 - -
HCH5g0091 226 SUPERFAMILY DNA-binding domain 87 147 IPR016177 GO:0003677(InterPro)
HCH5g0091 226 SMART rav1_2 87 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0091 226 CDD AP2 86 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0091 226 Pfam AP2 domain 87 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0091 HCH-Chr5:572962 HCH5g1316 HCH-Chr5:49952266 1.90E-45 dispersed
HCH5g0091 HCH-Chr5:572962 HCH6g1505 HCH-Chr6:48614265 1.20E-39 wgd
HCH5g0091 HCH-Chr5:572962 HCH7g1325 HCH-Chr7:46160915 1.20E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33563 PF00847 AP2 8.40E-15 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0091 K14516 - csv:101220325 233.417