Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH5g0091 | ATGGATTACTCCTCTTACTTTTCATTCTCGGATTCAGGATTCTCAAATGAATCATCTTCATTTGGTTCCCAAGAAAATGAATCCTTCTCATGGAGTGAGTTTTTCTCAATTCAAGACTCCCTGGAAAATGATTTTCTCAGCAGCCAAACATCAGAAGCCAATTCCCAGGTGATGGTTAAGGAAGAAATATCAGAAGTAACGTCCAATATTGAAGAAGAGAAACCGAGAAAGACGGTGGGGGTGGCGGCGGAAGAGAAGAGTTATAGAGGGGTAAGACGGAGGCCGTGGGGGAAGTATGCGGCGGAGATAAGGGATTCAACGAGGCATGGAGTTAGGGTTTGGCTTGGAACTTTTGATAGTGCTGAAGCAGCTGCTTTGGCTTATGATCAAGCTGCATTTTCAATGAGAGGTTCATTGGCAGTGTTGAATTTTCCTGTGGAAACAGTTAGAGAATCACTCCGAGATATTAAGTGGCATTTCGAAGACGGGTGCTCCCCGGTCGTGGCTTTGAAGAGGAAACACTCCTTGAGAAGGAAGTCGGCAGCGGCAGCGACCGCCGCTGCAGCCTCGATGAAGAAGAAGAAGAAGAATGTGGTAGTTTTAGAGGATTTGGGGACTGAGTATTTGGAGGAACTGTTGATGCTTAGTTCTTCTTCATATGAGAGTTTTAGTCCTTTGTGA | 681 | 45.23 | MDYSSYFSFSDSGFSNESSSFGSQENESFSWSEFFSIQDSLENDFLSSQTSEANSQVMVKEEISEVTSNIEEEKPRKTVGVAAEEKSYRGVRRRPWGKYAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGSLAVLNFPVETVRESLRDIKWHFEDGCSPVVALKRKHSLRRKSAAAATAAAASMKKKKKNVVVLEDLGTEYLEELLMLSSSSYESFSPL | 226 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 572962 | 573642 | + | evm.model.ptg000001l.91 | HCH5g0091 | 544243 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH5g0091 | 226 | PANTHER | DNA-BINDING DOMAIN | 47 | 188 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
HCH5g0091 | 226 | Gene3D | AP2/ERF domain | 86 | 147 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0091 | 226 | PRINTS | Ethylene responsive element binding protein signature | 88 | 99 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0091 | 226 | PRINTS | Ethylene responsive element binding protein signature | 111 | 127 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0091 | 226 | ProSiteProfiles | AP2/ERF domain profile. | 87 | 145 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0091 | 226 | FunFam | Ethylene-responsive transcription factor 2 | 86 | 147 | - | - | |
HCH5g0091 | 226 | SUPERFAMILY | DNA-binding domain | 87 | 147 | IPR016177 | GO:0003677(InterPro) | |
HCH5g0091 | 226 | SMART | rav1_2 | 87 | 151 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0091 | 226 | CDD | AP2 | 86 | 146 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH5g0091 | 226 | Pfam | AP2 domain | 87 | 138 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH5g0091 | HCH-Chr5:572962 | HCH5g1316 | HCH-Chr5:49952266 | 1.90E-45 | dispersed | |
HCH5g0091 | HCH-Chr5:572962 | HCH6g1505 | HCH-Chr6:48614265 | 1.20E-39 | wgd | |
HCH5g0091 | HCH-Chr5:572962 | HCH7g1325 | HCH-Chr7:46160915 | 1.20E-20 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33563 | PF00847 | AP2 | 8.40E-15 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH5g0091 | K14516 | - | csv:101220325 | 233.417 |