Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0114 ATGAAGAGTGATGTTGAGATAAAAAGAGGGAGGAGAGCTGGTGGAAGACGGAAGGATATTAGGAAGATAATGAAGTGTCTGTGTCCAGGTGGGGATTTAAGAGCCAGGGATGATATGATTCCGACATCAGAATCAACTGCGACTTTGGATAACTCGGCAAGCGAACACTCCTCACGGGCTGGAGAGATTGTAAAGAAGCCAGATATTGGAAATGTAGAAGAAGCCGAATCTTCACTTCGTGAGAGTGGTTGCTTGAATTATGAGGAAGCAAGAGCATTGTTGGGAAGATATGAGTATCAGAAAGGAAACATTGAAGCTGCTCTTCATGTATTTGAAGGAATCGATATTACTGCAGTAACTACCAAGATTGTGATCTCTATTGCTAGAAGAGGAGAACGTCAAAAGAGACGTTCGCAAAATTTTTCTACCCCACCAATGTCTATGCATGCTGTCAGTTTACTTTTTGAAGCCATCTTTCTCAAAGCAAAATCATTGCAAGCCCTTGGGAGGTTCAGAGAAGCTGCTCAATCTTGCAAAGTAATTCTGGATATACTTGAATCTTCATTTCCCGAAGGCTTGCCTGAAAACTTTGGTGCTGATTGTAAATTGCAGGATACACTTACAAAGGCTGTTGAACTGCTTCCAGAGCTATGGAAACTAGCTGATTCTTCTCAAGAAGCTATATTTTCATACCGACGAGCACTTCTTCATCATTGGCACCTTGATGCAGGGACCATTGCTAGAATGCAGAAAGAGTTTGCAATTTTTCTTTTGTACAGTGGAAGTGAAGCATGCCCCCCAAATCTACGGTCCCAAATGGACAGCTCATTTGTACCAAGAAACAATATTGAAGAAGCCATACTTTTATTTATTATACTTTTGAGAAAAGTTAGTCTTAGAAGGATTGATTGGGATCCATCGATCTTGGATCATCTCACCTTTGCCCTAACAATATCAGGGGATACAAGGGATTTAGCATGTCAAGTAGAGGAACTGCTTCCTGGGACTATACATCGAAAAGAAAGGTACTATACTCTAGCTCTTTGTTATTATGGAGCAGGTGAAGACTTGGATGCTTTGAATCTGTTGAGGAAATTGTTGAGTCGTAATGAGGATCCGAATTCTCTTCCTGCTTTATTAATGGCATCAAAGATTTGCGGCGAAAATTGCAATCATGCTGAAGAAGGAGCCAGTTTTGCTCGCAGGGCTCTTCAAAATTTGTATTCTGGATGTCATCAATTGGAAAGTGTTGCCAATTGTTTATTGGGTGTCTCACTTTCTATATATTCTAAATCAGCCATTGCTGAATCTGAGAGGTTCACCAGACAATCTGAGGCTCTACAGACTCTGGAAGCTGCAAGGAAAATGACGAGAATTACTGACCCTATTCTTCTCTATCATTTGAGTGTAGAGTATGCCAGTGAAAGGAAGTTAGATTCTGCACTTTATCATGCAAAGAAGTTGCTCAAACTGGAAGGTGGATCTAATGTTAAAACTTGGTTACTACTGGCTAGGATTCTCTCTGCTCAAAGACGATTTACAGATGGTGAAACCATCATAAATGCAGCTTTGGATCAGACAGGGAAATGGGATCAAGGAGAATTGCTTAGAACAAAAGCTAAGCTTCTAATTGCACAGGGTGAGTTGAAAGGTGCTATCGAGACTTATACTCAGTTACTTGCGGTTCTTCAAATTCAGAGCAATAGTTTTGGCTCCAGAGATAAGAAGCTACATAAGAGCAGCAGAAACTATGCTAGAAGTTTGGAATTGGAAGTGTGGCATGATTTAGCTGTAGTCTACATAAGGCTCTCCCAGTGGAATGATGTTGAGGCCTGCCTCTCTAAATCTAAGACCTTCTGTTCTTATTCTGCTTCTAGATATCATATCACAGGTATGCTTTATGAAGCGAAAGACATGCATAAAGAAGCTTTAAAAGCTTTTATGGTTGCTCTGGACATTGATCCCATCCACGTCCCAAGCTTGGTTTCCACTGCTGTGGTTATCAGGCGTTTCGGCCACGAATCGCATCCCACTATTCGAAGCTTGTTGATGGATGCCTTACGCCTCGACCAAATGAACCACGTCGCATGGTACAATCTTGGGCTACTCTACAAATCTGAGGGTACCAAATCATCATTAGTAGAAGCTGTTGATTGTTTTGAGGCTGCAACTTTTCTTGAAGAGTCTGCACCTGTTGAACCCTTCAGATGA 2211 41.38 MKSDVEIKRGRRAGGRRKDIRKIMKCLCPGGDLRARDDMIPTSESTATLDNSASEHSSRAGEIVKKPDIGNVEEAESSLRESGCLNYEEARALLGRYEYQKGNIEAALHVFEGIDITAVTTKIVISIARRGERQKRRSQNFSTPPMSMHAVSLLFEAIFLKAKSLQALGRFREAAQSCKVILDILESSFPEGLPENFGADCKLQDTLTKAVELLPELWKLADSSQEAIFSYRRALLHHWHLDAGTIARMQKEFAIFLLYSGSEACPPNLRSQMDSSFVPRNNIEEAILLFIILLRKVSLRRIDWDPSILDHLTFALTISGDTRDLACQVEELLPGTIHRKERYYTLALCYYGAGEDLDALNLLRKLLSRNEDPNSLPALLMASKICGENCNHAEEGASFARRALQNLYSGCHQLESVANCLLGVSLSIYSKSAIAESERFTRQSEALQTLEAARKMTRITDPILLYHLSVEYASERKLDSALYHAKKLLKLEGGSNVKTWLLLARILSAQRRFTDGETIINAALDQTGKWDQGELLRTKAKLLIAQGELKGAIETYTQLLAVLQIQSNSFGSRDKKLHKSSRNYARSLELEVWHDLAVVYIRLSQWNDVEACLSKSKTFCSYSASRYHITGMLYEAKDMHKEALKAFMVALDIDPIHVPSLVSTAVVIRRFGHESHPTIRSLLMDALRLDQMNHVAWYNLGLLYKSEGTKSSLVEAVDCFEAATFLEESAPVEPFR 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 704421 707964 + evm.model.ptg000001l.114 HCH5g0114 544266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0114 736 MobiDBLite consensus disorder prediction 42 61 - -
HCH5g0114 736 PANTHER PROTEIN NPG1 16 736 IPR043376 -
HCH5g0114 736 Gene3D Tetratricopeptide repeat domain 429 578 IPR011990 GO:0005515(InterPro)
HCH5g0114 736 Gene3D Tetratricopeptide repeat domain 45 422 IPR011990 GO:0005515(InterPro)
HCH5g0114 736 Gene3D Tetratricopeptide repeat domain 579 730 IPR011990 GO:0005515(InterPro)
HCH5g0114 736 SUPERFAMILY TPR-like 157 561 IPR011990 GO:0005515(InterPro)
HCH5g0114 736 ProSiteProfiles TPR repeat profile. 624 657 IPR019734 GO:0005515(InterPro)
HCH5g0114 736 SMART tpr_5 624 657 IPR019734 GO:0005515(InterPro)
HCH5g0114 736 SMART tpr_5 533 566 IPR019734 GO:0005515(InterPro)
HCH5g0114 736 SMART tpr_5 462 495 IPR019734 GO:0005515(InterPro)
HCH5g0114 736 SMART tpr_5 340 373 IPR019734 GO:0005515(InterPro)
HCH5g0114 736 SMART tpr_5 497 530 IPR019734 GO:0005515(InterPro)
HCH5g0114 736 SMART tpr_5 694 730 IPR019734 GO:0005515(InterPro)
HCH5g0114 736 SMART tpr_5 590 623 IPR019734 GO:0005515(InterPro)
HCH5g0114 736 SMART tpr_5 155 188 IPR019734 GO:0005515(InterPro)
HCH5g0114 736 MobiDBLite consensus disorder prediction 42 58 - -
HCH5g0114 736 SUPERFAMILY TPR-like 533 708 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0914 HCH-Chr12:6178190 HCH5g0114 HCH-Chr5:704421 4.90E-161 dispersed
HCH4g0584 HCH-Chr4:3849293 HCH5g0114 HCH-Chr5:704421 1.40E-147 dispersed
HCH5g0114 HCH-Chr5:704421 HCH7g1352 HCH-Chr7:46367125 2.80E-239 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0114 K21843 - csv:101223229 1127.85