Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0129 ATGAAGTTGAAAACCCAGATTTTGTTTTCTTCATTTTTTTACTGTTTGATTGTTTATTTTGTTAAATGTGCTGCTGTGGTTGGTGATGAAGTTTTGGCTTTGGTTTCAATTAAATCTGGTCTTGTTGATCCTTTAAACAGGTTAAAAGATTGGAAAGTGCCTGAAAATCATGTTATTGGTAATGGCAAGTTTGCAGGGCACTGTAATTGGAGTGGTGTATCTTGCAATTCAGAAGGAGCTGTTGAGAAACTCAATCTTTCTGGTATGAATCTCAGTGGCATTTTGTCAGATGACTTGCAGAGACTAAAAAGTCTCACTTTTCTTGATTTATCCTGCAATGGTTTTTCCACTTCTTTGCCAAAATCTATTGCTAATCTCACTTCATTGAAGAGCTTTGATGTGAGTCAAAACTTTTTTGTGGGAATCATTCCTGCTGGTTTTGGGAAGATGTTTGGTTTGACAAACTTCAATGTGTCAAGCAATAATTTCTCTGGTTCTGTTCCTGAAGATCTTGGAAATGCAACTCAGTTGGAGATTTTGGATCTTAGAGGGAGTTTTTTTGAAGGGTCAATTCCCATATCTTTCAAGAATTTACAGAAGTTGAAGTTTCTTGGACTTTCTGGGAATAATCTAACCGGCCGAATCCCGCCAGAGATCGGCCAGTTATCGTCGCTGGAATCTATGATTCTGGGATACAATGAGTTTGAAGGTGGGATTCCATCAGAGTTTGGAAACCTCACCAACCTAAAGTATCTTGATTTGGCTGTTGGAAATCTTGGTGGTATAATTCCTGCTGAGCTTGGAAGACTTACAGTCCTGGATACATTGTATCTCTATAAGAATGATTTCGAAGGTCGAATTCCTTTGACTATCGGCAACATTACTTCATTAGTCTTTCTTGATCTCTCTGACAACATGTTAACTGGAGAAATTCCAGCTGGGATAGCTGAGTTGAAGAATTTGCAGCTGCTGAATCTAATGTGTAACAAGCTGTCTGGTGAGGTACCTCCAGGAATAGGAGGGTTGACCAAATTGCAGGTTCTAGAGCTCTGGAACAACTCCTTTTCGGGCCAACTGCCTAGTGATCTTGGCAGGAATTCAGAGTTGGTATGGTTGGATGTATCATCCAATTCATTCACTGGTCAGATTCCAGCATCTTTATGCAATAGAGGAAATCTAACCAAGCTGATCCTCTTTAACAATGCCTTCTCAGGTCCTATTCCGATTGGATTTTCATCATGTTACTCGCTTGTTCGCGTTCGTATGCAGAACAATCTGTTGTCTGGGACAATTCCAGTGGGGATTGGCAAACTTGGGAAGCTTCAAAGGCTAGAATTAGCAAACAACAGTCTCATTGGCAGTATCCCAAGTGATATTTCATATTCTACATCCCTTTCTTTCATTGATCTTTCTGAAAATAGCCTCCATTCTTCTCTTCCTTCCTCTATTCTTTCTATTCCAAATCTTCAAACTTTTATTGTCTCTAAAAATAACTTAGAAGGTGAAATTCCAAACCAGTTTCAGGATTGTCCTGCACTTTCCGTGCTTGATCTCTCATCTAACCATTTCACAGGAAGCATTCCAGCAAGCATTGCTTCATGTGAGAGGTTGGTAACCCTGAATCTCAGAAACAACCAGTTAAGTGGAGAAATCCCTAAACAGATTGCAAATATGCCTTCATTATCCATTCTTGATCTGTCCAACAACTCTCTAACTGGCAGAATACCTGATAGTTTTGGTATCTCTCCAGCACTTGAATCATTTAATGTTTCATACAATAAGCTAGAGGGTCCGGTCCCATTAAATGGTATGTTAAGAACAATAAACCCAACTGATCTTCAGGGTAATCCCGGTCTCTGTGGAGCTGTCCTACCTCCATGTTCACCAAATTCTGCAATTGCATCAGGAGACGGGAACTCGCACAAAAAGCATATCATTGCCACTTGGATCATTGGAATATCTGCAGTTTTGGCAACTGGTGTCACTCTTTTCGGTGTTCGATCAATGTACAAAAGGTGGTACTCAAATGGAAGCTGCTTTGAAGAGAGATATGAAATGGGTAGTGGTGATTGGCCATGGAGATTGATGGCATTCCAGAGGCTTGGATTCACAAGCAGTGACATTTTGACTTGCATCAAGGAATCAAATATAATTGGAATGGGAGCAACCGGGATTGTTTACAAAGCTGAAATGCCACAATTAAAGACAATTGTGGCAGTAAAAAAGCTGTGGAGATCAGAACCAGATCTTGAACTTGGAAGCAGTGATGGTCTAGCAGGAGAAGTGAATTTATTAGGAAAGTTACGGCACAGGAACGTCGTTCGCTTACTAGGATTTATGCATAATGAAGTTGATGTGATGATAGTTTATGAGTTTATGCAAAATGGAAGCCTTGGAGAAGCCTTGCATGGTAAACAAGCAGGGAGATTGCTTGTGGATTGGGTTTCAAGATACAACATTGCACTTGGAGTTGCACAAGGGCTAGCTTATCTCCATCATGACTGCTGCCCACCCATCATTCACCGTGATGTCAAGTCAAATAATATACTTCTTGATTCAAATCTTGAAGCCAGGATAGCTGATTTCGGGTTGGCACGGATGATGGCTCGAAAGAACGAGACAGTTTCGATGGTGGCTGGATCATACGGCTACATTGCCCCTGAATATGGATACACATTGAAGGTGGATGAAAAGATTGACATTTACAGCTATGGGGTGGTTCTTTTAGAGTTACTGACTGGAAAGAAACCATTAGATCCTGAGTTTGGAGAATCTGTGGACATAGTTGAATGGATTAAAAGGAAAATCAGGGACAACAAATCATTAGAAGAAGCATTAGATCCAAATTTAGGAAATTTCAAGCATGTTCAAGAAGAAATGTTGTTTGTTCTTAGAATAGCACTTCTCTGCACTGCCAAGCTCCCAAAAGACAGACCCTCCATGAGAGATATTATAACAATGCTTGGAGAAGCAAAACCAAGGAGAAAAAGTAATAGTGTCAATGAAGGATTTGGGACTAACAAAGACAAGCCAGTCTTCAGCACATCGCCTGTAAACGCCCTGCTGTAG 3069 40.4 MKLKTQILFSSFFYCLIVYFVKCAAVVGDEVLALVSIKSGLVDPLNRLKDWKVPENHVIGNGKFAGHCNWSGVSCNSEGAVEKLNLSGMNLSGILSDDLQRLKSLTFLDLSCNGFSTSLPKSIANLTSLKSFDVSQNFFVGIIPAGFGKMFGLTNFNVSSNNFSGSVPEDLGNATQLEILDLRGSFFEGSIPISFKNLQKLKFLGLSGNNLTGRIPPEIGQLSSLESMILGYNEFEGGIPSEFGNLTNLKYLDLAVGNLGGIIPAELGRLTVLDTLYLYKNDFEGRIPLTIGNITSLVFLDLSDNMLTGEIPAGIAELKNLQLLNLMCNKLSGEVPPGIGGLTKLQVLELWNNSFSGQLPSDLGRNSELVWLDVSSNSFTGQIPASLCNRGNLTKLILFNNAFSGPIPIGFSSCYSLVRVRMQNNLLSGTIPVGIGKLGKLQRLELANNSLIGSIPSDISYSTSLSFIDLSENSLHSSLPSSILSIPNLQTFIVSKNNLEGEIPNQFQDCPALSVLDLSSNHFTGSIPASIASCERLVTLNLRNNQLSGEIPKQIANMPSLSILDLSNNSLTGRIPDSFGISPALESFNVSYNKLEGPVPLNGMLRTINPTDLQGNPGLCGAVLPPCSPNSAIASGDGNSHKKHIIATWIIGISAVLATGVTLFGVRSMYKRWYSNGSCFEERYEMGSGDWPWRLMAFQRLGFTSSDILTCIKESNIIGMGATGIVYKAEMPQLKTIVAVKKLWRSEPDLELGSSDGLAGEVNLLGKLRHRNVVRLLGFMHNEVDVMIVYEFMQNGSLGEALHGKQAGRLLVDWVSRYNIALGVAQGLAYLHHDCCPPIIHRDVKSNNILLDSNLEARIADFGLARMMARKNETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGKKPLDPEFGESVDIVEWIKRKIRDNKSLEEALDPNLGNFKHVQEEMLFVLRIALLCTAKLPKDRPSMRDIITMLGEAKPRRKSNSVNEGFGTNKDKPVFSTSPVNALL 1022
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 773621 776885 - evm.model.ptg000001l.129 HCH5g0129 544281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0129 1022 Gene3D Ribonuclease Inhibitor 369 631 IPR032675 -
HCH5g0129 1022 Gene3D Ribonuclease Inhibitor 185 258 IPR032675 -
HCH5g0129 1022 FunFam MDIS1-interacting receptor like kinase 1 712 796 - -
HCH5g0129 1022 Gene3D Ribonuclease Inhibitor 26 184 IPR032675 -
HCH5g0129 1022 PRINTS Leucine-rich repeat signature 297 310 - -
HCH5g0129 1022 PRINTS Leucine-rich repeat signature 558 571 - -
HCH5g0129 1022 FunFam MDIS1-interacting receptor like kinase 1 797 1006 - -
HCH5g0129 1022 Pfam Leucine rich repeat 487 547 IPR001611 GO:0005515(InterPro)
HCH5g0129 1022 Pfam Leucine rich repeat N-terminal domain 29 76 IPR013210 -
HCH5g0129 1022 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 186 286 - -
HCH5g0129 1022 Pfam Leucine Rich Repeat 200 222 IPR001611 GO:0005515(InterPro)
HCH5g0129 1022 Pfam Leucine Rich Repeat 344 365 IPR001611 GO:0005515(InterPro)
HCH5g0129 1022 Pfam Leucine Rich Repeat 104 126 IPR001611 GO:0005515(InterPro)
HCH5g0129 1022 Pfam Leucine Rich Repeat 369 389 IPR001611 GO:0005515(InterPro)
HCH5g0129 1022 Pfam Leucine Rich Repeat 296 317 IPR001611 GO:0005515(InterPro)
HCH5g0129 1022 Pfam Leucine Rich Repeat 560 580 IPR001611 GO:0005515(InterPro)
HCH5g0129 1022 Pfam Leucine Rich Repeat 176 198 IPR001611 GO:0005515(InterPro)
HCH5g0129 1022 Pfam Leucine Rich Repeat 224 246 IPR001611 GO:0005515(InterPro)
HCH5g0129 1022 Pfam Leucine Rich Repeat 320 342 IPR001611 GO:0005515(InterPro)
HCH5g0129 1022 Pfam Leucine Rich Repeat 440 460 IPR001611 GO:0005515(InterPro)
HCH5g0129 1022 Pfam Leucine Rich Repeat 153 173 IPR001611 GO:0005515(InterPro)
HCH5g0129 1022 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 17 991 IPR050647 -
HCH5g0129 1022 MobiDBLite consensus disorder prediction 999 1022 - -
HCH5g0129 1022 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 369 631 - -
HCH5g0129 1022 ProSitePatterns Serine/Threonine protein kinases active-site signature. 839 851 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH5g0129 1022 ProSitePatterns Protein kinases ATP-binding region signature. 718 742 IPR017441 GO:0005524(InterPro)
HCH5g0129 1022 SUPERFAMILY Protein kinase-like (PK-like) 709 988 IPR011009 -
HCH5g0129 1022 SUPERFAMILY RNI-like 261 601 - -
HCH5g0129 1022 Gene3D Transferase(Phosphotransferase) domain 1 797 1010 - -
HCH5g0129 1022 SMART LRR_typ_2 558 582 IPR003591 -
HCH5g0129 1022 SMART LRR_typ_2 198 222 IPR003591 -
HCH5g0129 1022 SMART LRR_typ_2 342 366 IPR003591 -
HCH5g0129 1022 SMART LRR_typ_2 126 149 IPR003591 -
HCH5g0129 1022 SMART LRR_typ_2 294 318 IPR003591 -
HCH5g0129 1022 SMART LRR_typ_2 438 462 IPR003591 -
HCH5g0129 1022 SMART LRR_typ_2 102 125 IPR003591 -
HCH5g0129 1022 SUPERFAMILY L domain-like 66 356 - -
HCH5g0129 1022 Gene3D Phosphorylase Kinase; domain 1 711 796 - -
HCH5g0129 1022 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 27 185 - -
HCH5g0129 1022 ProSiteProfiles Protein kinase domain profile. 712 995 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0129 1022 Gene3D Ribonuclease Inhibitor 259 361 IPR032675 -
HCH5g0129 1022 MobiDBLite consensus disorder prediction 995 1022 - -
HCH5g0129 1022 SMART serkin_6 712 988 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0129 1022 Pfam Protein kinase domain 714 985 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1080 HCH-Chr11:42286227 HCH5g0129 HCH-Chr5:773621 4.20E-100 dispersed
HCH11g1081 HCH-Chr11:42292424 HCH5g0129 HCH-Chr5:773621 2.00E-91 dispersed
HCH4g0303 HCH-Chr4:1977884 HCH5g0129 HCH-Chr5:773621 2.80E-71 dispersed
HCH5g0129 HCH-Chr5:773621 HCH6g1438 HCH-Chr6:48138116 6.20E-88 dispersed
HCH5g0129 HCH-Chr5:773621 HCH14g0409 HCH-Chr14:33102975 2.50E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81498 PF00069 Pkinase 1.20E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0129 - - - 0.0