Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0137 ATGGCAGCTATGGCTTGCTCCGCCGCTGATCTCCAGCCCCTCCTCGGCGGCTCACCCAACGCCACTGCCGTTGCCGAATATATATGCGGTCGCTTCAACGCCGTATCGGACAAATTCGTCGATACGACGTACGCTGTCGATAACACTTACCTTTTGTTTTCAGCGTACCTTGTTTTTGCCATGCAGCTAGGGTTTGCCATGTTGTGTGCGGGTTCCGTACGAGCCAAGAATACTATGAATATCATGCTTACCAATGTTCTTGATGCTGCTACCGGTGGCATCTTTTATTATGTCTTTGGATTTGCTTTGGCGTTTGGAACTCCTTCTAATGGTTTTATTGGTCGGCATTACTTTGGCCTTTCGGAATTCCCATCTTCTTCGTTTGATTATGGGTTTTTTCTGTTTCAATGGGCGTTTGCTATTGCTGCTGCTGGAATAACGAGTGGTTCCATTGCTGAACGGACACAGTTCGTCGCGTATTTGATCTATTCGTCTGTCTTGACTGGTTTGGTTTACCCTATTGTCTCTCATTGGTTTTGGTCCGCTGATGGATGGGCAAGCCCTGCCAGGACGGAGAATCTTCTATTCGGATCGGGAGTGATTGATTTTGCCGGCTCCGGTGTTGTGCATATGGTTGGAGGCATTGCCGGATTATGGGGTGCACTAATAGAAGGCCCCCGCATCGGCCGGTTCGATCACGCGGGTCGATCAGTAGCTCTACGTGGACACAGCGGCACATTGGTAGTCCTCGGAACATTCCTGCTGTGGTTTGGTTGGTATGGTTTCAATCCAGGTTCATTTCTCAACATCCTCAAAGCATACGGTGGAGGCACCGGGGGATCCTATTACGGACAATGGAGTGCAATTGGTAGAACTGCCGTGACAACCACACTCTCGGGCTGCACGGCAGCACTAACGACCCTTTTCGGCAAACGCTTACTCATAGGTCATTGGAATGTGACTGATGTTTGTAATGGCCTATTAGGTGGATTTGCGGCAATCACCGCCGGGTGCGCGGTGGTCGATCCGTGGGCTGCAATAGTTTGTGGTTTTTTCTCGGCTTGGGTTCTAATTGGGTTCAACAAACTCGCGGAAAAATTCAAGTACGATGATCCGTTAGAGGCGGCGCAATTGCATGGAGGGTGTGGAGCATGGGGGATAATATTCACTGCCTTGTTTGCCAAGCAAGCTTATGTGAATGAGATATATCCGGGGTTGCCGGAAAGGCCATACGGGTTGCTGATGGGAGGAGGAGGGAGGCTTTTGGCAGCTCATATGGTGCAGATCTTGGCAATTGTAGCTTGGGTTAGTATTACAATGGGGACAGTGTTTTGGTTGCTGCATAAGTTTCAACTTCTGAGGATCACAGCAGATGAGGAGATGAATGGAATGGACTTGACAAGTCATGGTGGCTTAGCGTATGTGTATAATGATGAAGAGAAATCTGGATTTGTTTGA 1458 49.11 MAAMACSAADLQPLLGGSPNATAVAEYICGRFNAVSDKFVDTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFYYVFGFALAFGTPSNGFIGRHYFGLSEFPSSSFDYGFFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGLVYPIVSHWFWSADGWASPARTENLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHAGRSVALRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKAYGGGTGGSYYGQWSAIGRTAVTTTLSGCTAALTTLFGKRLLIGHWNVTDVCNGLLGGFAAITAGCAVVDPWAAIVCGFFSAWVLIGFNKLAEKFKYDDPLEAAQLHGGCGAWGIIFTALFAKQAYVNEIYPGLPERPYGLLMGGGGRLLAAHMVQILAIVAWVSITMGTVFWLLHKFQLLRITADEEMNGMDLTSHGGLAYVYNDEEKSGFV 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 822545 824362 + evm.model.ptg000001l.137 HCH5g0137 544289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0137 485 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
HCH5g0137 485 NCBIfam ammonium transporter 47 474 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
HCH5g0137 485 SUPERFAMILY Ammonium transporter 44 455 - -
HCH5g0137 485 PANTHER AMMONIUM TRANSPORTER 36 479 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
HCH5g0137 485 Gene3D Ammonium transporter AmtB like domains 29 484 IPR029020 -
HCH5g0137 485 FunFam Ammonium transporter 28 484 - -
HCH5g0137 485 Pfam Ammonium Transporter Family 50 474 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0668 HCH-Chr10:5870821 HCH5g0137 HCH-Chr5:822545 2.00E-212 dispersed
HCH5g0137 HCH-Chr5:822545 HCH6g1444 HCH-Chr6:48186979 8.50E-205 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0137 K03320 - csv:101223077 875.93