Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0141 ATGCCTTTTTTGATTCCCTGTTATCTTTTGGTTCTTCATGTCCTCAATTTGCTTTCCTTTTCCTCAGGGCAATCTTCTTCCCATATATACTTGTCTCCTTCCTTACAGCCAAATCAGCAAACAACAATGACAGAGATCTCTCTAGAACATGAAAGGTCGATGTCAATGAGTTTGTCACATGTTCTAGCAAATTCACACAATACCTGGATATTTAGGTCTTCTTTGGGACCATCCTCTGCTCCAGTGCCCTCTCCAGGTCCTAGAAGTACACCTCTACCTATTCAACATCGTCGACGGCATCGTAGACGACCTCATGTGGTTGCACCTGCCCCATCAAAAGATCAAGGTTGTGATCAAATATGTATGGAGCCCCTTACTGCAGCTCCCTTTGGTTCACCTTGTGGCTGTGTGTTTCCCATGAAAGTCAAACTTCTTCTGGATATAGCTCCATTTGCTGTCTTTCCGGTGATGAATGAGCTAGAAATTGAGATTGCAGAGGGGACTTATTTGGAGCAAAGTCAAGTGAAAATCATGGGTGCAAGTGCAGATAATCAAAATCAAGGAAGAACTATGGTGGATATTAATTTAGTGCCTCTAGGAGAAAAGTTTGATAATACCACTGCAGTACTAACATACAGAAGATTTTGGGATAAAAAAGTGCATCTGAACGAATCTCTTTTTGGTAATTATGAAGTTATCTACATCAGCTACCCAGGGATTCCTTCTTCACCAACATATGGAGGGTACTTGGGAACTGCTCCTAGTGGAAGTACCGGAGATCTTCCTATCACTGCAAATTTTGTTACTAAAAACCAGCGGATGAATGTCAAAACAATTGCCATCATTGCACTGTCAGCATTTGTTGTGTTGTTAGTGTTTGTTGGAGCTCTTTCCATCTTTTTGAAATGGAGGAAGGTTGGAAGACCATCTAGTGCTGTTGGTCCGGTCTTTACATCATCGATTAACAAAAGATCTGGTTTTGGGTCAACCTTATCAAGCAGCATTGCAAGCTCTATCTCGGCTTCCCTTATCTCCACAATGCCAACCAGTATTCTATCTGTTAAGACATTTACACTTTCTGAACTCGAGAAAGCAACAGATAAGTTCAGTTCAAAGGGAGTTTTAGGTGAAGGTGGATTTGGCCGAGTTTACTGTGGACTTTTGGAAGATGGAAATGAAGTTGCTGTTAAGTTACTTACAAGGGATAATCAGAATAGAGATCGTGAGTTTATTGCAGAAGTTGAGATGTTAAGTAGACTGCATCACCGAAATCTAGTGAAACTAATTGGCATTTGCATTGAAGGCCGCACTCGCTGCTTAGTGTATGAGCTTGTTCATAATGGCAGTGTTGAGTCCCACTTGCACGGTGTTGACAAGAAAAAAGGACCACTTGACTGGGATGCACGGCTAAAGATTGCTCTTGGAGCAGCAAGAGGTTTGGCATATCTTCATGAAGATTCTAATCCTCGTGTAATTCACCGTGATTTCAAGGCCAGTAATGTTCTATTGGAAGTTGACTTCACCCCAAAGGTTTCAGATTTTGGGTTGGCTAGGGAGGCAACTGAAGGAAGTGAACATATCTCAACACGGGTCATGGGAACTTTCGGGTATGTAGCCCCTGAATATGCAATGACAGGGCACCTACTAGTCAAAAGTGATGTTTACAGTTATGGGGTTGTGCTGCTTGAGCTTCTTTCAGGAAGAAAACCAGTGGACATGTCCCAACCACACGGTGAGGAGAACCTAGTAACTTGGGCTCGGCCCCTACTGACAAGTAGAGAAGGCTTGGAGCAACTAGTAGATCCTTCTCTTGCTGGTAGTTATGACTTCGATGACATGGCTAAGGTAGCTGCCATTGCTTCTATGTGCGTTCATCCGGAGGTGAGTCAGAGGCCATTTATGGGAGAAGTTGTGCAGGCTCTAAAGCTCATATACAACGACGCAGACGAGATGTGTGGAGACTGCTGCAGTCAAAAAGAGTCCTCTGCTCGAGACTCAGATTTCAAGGGTGATCTTGTGCCATCAGATAGCAGTTGGTGGAATGCTGGTGGCCTTACACCTCGATTGACATACGGGCAAGCCTCTTCCTTTATTACAATGGAGTACAGCTCCGGCCCACTTGAAGAAATGGAAAACAGACCGTTTTCAACTTCAAGTTTGGTAGGGGATGAAATATCGTTGCCTATTCGGCATGGAAACAGGTCAGGTCCATTACGAACAGCTCGAAGCAAGCCTGCTTTTTATAGATTTTCAGGAAGTAGGAGTGAACATGGAGGAACCCATCCAAGGCCTACTTGGAATGATGGGTTTTGGGTATGA 2319 43.68 MPFLIPCYLLVLHVLNLLSFSSGQSSSHIYLSPSLQPNQQTTMTEISLEHERSMSMSLSHVLANSHNTWIFRSSLGPSSAPVPSPGPRSTPLPIQHRRRHRRRPHVVAPAPSKDQGCDQICMEPLTAAPFGSPCGCVFPMKVKLLLDIAPFAVFPVMNELEIEIAEGTYLEQSQVKIMGASADNQNQGRTMVDINLVPLGEKFDNTTAVLTYRRFWDKKVHLNESLFGNYEVIYISYPGIPSSPTYGGYLGTAPSGSTGDLPITANFVTKNQRMNVKTIAIIALSAFVVLLVFVGALSIFLKWRKVGRPSSAVGPVFTSSINKRSGFGSTLSSSIASSISASLISTMPTSILSVKTFTLSELEKATDKFSSKGVLGEGGFGRVYCGLLEDGNEVAVKLLTRDNQNRDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVHNGSVESHLHGVDKKKGPLDWDARLKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEVDFTPKVSDFGLAREATEGSEHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMSQPHGEENLVTWARPLLTSREGLEQLVDPSLAGSYDFDDMAKVAAIASMCVHPEVSQRPFMGEVVQALKLIYNDADEMCGDCCSQKESSARDSDFKGDLVPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEEMENRPFSTSSLVGDEISLPIRHGNRSGPLRTARSKPAFYRFSGSRSEHGGTHPRPTWNDGFWV 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 841047 845660 + evm.model.ptg000001l.141 HCH5g0141 544293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0141 772 Pfam Protein tyrosine and serine/threonine kinase 373 641 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH5g0141 772 FunFam Receptor-like serine/threonine-protein kinase ALE2 445 662 - -
HCH5g0141 772 ProSitePatterns Serine/Threonine protein kinases active-site signature. 491 503 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH5g0141 772 SUPERFAMILY Protein kinase-like (PK-like) 347 644 IPR011009 -
HCH5g0141 772 ProSiteProfiles Protein kinase domain profile. 369 644 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH5g0141 772 MobiDBLite consensus disorder prediction 750 772 - -
HCH5g0141 772 FunFam receptor-like serine/threonine-protein kinase ALE2 342 444 - -
HCH5g0141 772 MobiDBLite consensus disorder prediction 77 113 - -
HCH5g0141 772 Gene3D Transferase(Phosphotransferase) domain 1 445 665 - -
HCH5g0141 772 Gene3D Phosphorylase Kinase; domain 1 343 444 - -
HCH5g0141 772 ProSitePatterns Protein kinases ATP-binding region signature. 375 397 IPR017441 GO:0005524(InterPro)
HCH5g0141 772 CDD STKc_IRAK 375 644 - -
HCH5g0141 772 PANTHER OS01G0750732 PROTEIN 119 666 IPR050885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1481 HCH-Chr4:11199573 HCH5g0141 HCH-Chr5:841047 1.60E-169 dispersed
HCH5g0141 HCH-Chr5:841047 HCH6g0442 HCH-Chr6:12270439 2.60E-107 dispersed
HCH7g0995 HCH-Chr7:40803401 HCH5g0141 HCH-Chr5:841047 1.00E-70 dispersed
HCH5g0141 HCH-Chr5:841047 HCH8g0646 HCH-Chr8:43267767 6.80E-180 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81499 PF07714 PK_Tyr_Ser-Thr 3.20E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0141 - - - 0.0