Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH5g0141 | ATGCCTTTTTTGATTCCCTGTTATCTTTTGGTTCTTCATGTCCTCAATTTGCTTTCCTTTTCCTCAGGGCAATCTTCTTCCCATATATACTTGTCTCCTTCCTTACAGCCAAATCAGCAAACAACAATGACAGAGATCTCTCTAGAACATGAAAGGTCGATGTCAATGAGTTTGTCACATGTTCTAGCAAATTCACACAATACCTGGATATTTAGGTCTTCTTTGGGACCATCCTCTGCTCCAGTGCCCTCTCCAGGTCCTAGAAGTACACCTCTACCTATTCAACATCGTCGACGGCATCGTAGACGACCTCATGTGGTTGCACCTGCCCCATCAAAAGATCAAGGTTGTGATCAAATATGTATGGAGCCCCTTACTGCAGCTCCCTTTGGTTCACCTTGTGGCTGTGTGTTTCCCATGAAAGTCAAACTTCTTCTGGATATAGCTCCATTTGCTGTCTTTCCGGTGATGAATGAGCTAGAAATTGAGATTGCAGAGGGGACTTATTTGGAGCAAAGTCAAGTGAAAATCATGGGTGCAAGTGCAGATAATCAAAATCAAGGAAGAACTATGGTGGATATTAATTTAGTGCCTCTAGGAGAAAAGTTTGATAATACCACTGCAGTACTAACATACAGAAGATTTTGGGATAAAAAAGTGCATCTGAACGAATCTCTTTTTGGTAATTATGAAGTTATCTACATCAGCTACCCAGGGATTCCTTCTTCACCAACATATGGAGGGTACTTGGGAACTGCTCCTAGTGGAAGTACCGGAGATCTTCCTATCACTGCAAATTTTGTTACTAAAAACCAGCGGATGAATGTCAAAACAATTGCCATCATTGCACTGTCAGCATTTGTTGTGTTGTTAGTGTTTGTTGGAGCTCTTTCCATCTTTTTGAAATGGAGGAAGGTTGGAAGACCATCTAGTGCTGTTGGTCCGGTCTTTACATCATCGATTAACAAAAGATCTGGTTTTGGGTCAACCTTATCAAGCAGCATTGCAAGCTCTATCTCGGCTTCCCTTATCTCCACAATGCCAACCAGTATTCTATCTGTTAAGACATTTACACTTTCTGAACTCGAGAAAGCAACAGATAAGTTCAGTTCAAAGGGAGTTTTAGGTGAAGGTGGATTTGGCCGAGTTTACTGTGGACTTTTGGAAGATGGAAATGAAGTTGCTGTTAAGTTACTTACAAGGGATAATCAGAATAGAGATCGTGAGTTTATTGCAGAAGTTGAGATGTTAAGTAGACTGCATCACCGAAATCTAGTGAAACTAATTGGCATTTGCATTGAAGGCCGCACTCGCTGCTTAGTGTATGAGCTTGTTCATAATGGCAGTGTTGAGTCCCACTTGCACGGTGTTGACAAGAAAAAAGGACCACTTGACTGGGATGCACGGCTAAAGATTGCTCTTGGAGCAGCAAGAGGTTTGGCATATCTTCATGAAGATTCTAATCCTCGTGTAATTCACCGTGATTTCAAGGCCAGTAATGTTCTATTGGAAGTTGACTTCACCCCAAAGGTTTCAGATTTTGGGTTGGCTAGGGAGGCAACTGAAGGAAGTGAACATATCTCAACACGGGTCATGGGAACTTTCGGGTATGTAGCCCCTGAATATGCAATGACAGGGCACCTACTAGTCAAAAGTGATGTTTACAGTTATGGGGTTGTGCTGCTTGAGCTTCTTTCAGGAAGAAAACCAGTGGACATGTCCCAACCACACGGTGAGGAGAACCTAGTAACTTGGGCTCGGCCCCTACTGACAAGTAGAGAAGGCTTGGAGCAACTAGTAGATCCTTCTCTTGCTGGTAGTTATGACTTCGATGACATGGCTAAGGTAGCTGCCATTGCTTCTATGTGCGTTCATCCGGAGGTGAGTCAGAGGCCATTTATGGGAGAAGTTGTGCAGGCTCTAAAGCTCATATACAACGACGCAGACGAGATGTGTGGAGACTGCTGCAGTCAAAAAGAGTCCTCTGCTCGAGACTCAGATTTCAAGGGTGATCTTGTGCCATCAGATAGCAGTTGGTGGAATGCTGGTGGCCTTACACCTCGATTGACATACGGGCAAGCCTCTTCCTTTATTACAATGGAGTACAGCTCCGGCCCACTTGAAGAAATGGAAAACAGACCGTTTTCAACTTCAAGTTTGGTAGGGGATGAAATATCGTTGCCTATTCGGCATGGAAACAGGTCAGGTCCATTACGAACAGCTCGAAGCAAGCCTGCTTTTTATAGATTTTCAGGAAGTAGGAGTGAACATGGAGGAACCCATCCAAGGCCTACTTGGAATGATGGGTTTTGGGTATGA | 2319 | 43.68 | MPFLIPCYLLVLHVLNLLSFSSGQSSSHIYLSPSLQPNQQTTMTEISLEHERSMSMSLSHVLANSHNTWIFRSSLGPSSAPVPSPGPRSTPLPIQHRRRHRRRPHVVAPAPSKDQGCDQICMEPLTAAPFGSPCGCVFPMKVKLLLDIAPFAVFPVMNELEIEIAEGTYLEQSQVKIMGASADNQNQGRTMVDINLVPLGEKFDNTTAVLTYRRFWDKKVHLNESLFGNYEVIYISYPGIPSSPTYGGYLGTAPSGSTGDLPITANFVTKNQRMNVKTIAIIALSAFVVLLVFVGALSIFLKWRKVGRPSSAVGPVFTSSINKRSGFGSTLSSSIASSISASLISTMPTSILSVKTFTLSELEKATDKFSSKGVLGEGGFGRVYCGLLEDGNEVAVKLLTRDNQNRDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVHNGSVESHLHGVDKKKGPLDWDARLKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEVDFTPKVSDFGLAREATEGSEHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMSQPHGEENLVTWARPLLTSREGLEQLVDPSLAGSYDFDDMAKVAAIASMCVHPEVSQRPFMGEVVQALKLIYNDADEMCGDCCSQKESSARDSDFKGDLVPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEEMENRPFSTSSLVGDEISLPIRHGNRSGPLRTARSKPAFYRFSGSRSEHGGTHPRPTWNDGFWV | 772 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 841047 | 845660 | + | evm.model.ptg000001l.141 | HCH5g0141 | 544293 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH5g0141 | 772 | Pfam | Protein tyrosine and serine/threonine kinase | 373 | 641 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH5g0141 | 772 | FunFam | Receptor-like serine/threonine-protein kinase ALE2 | 445 | 662 | - | - | |
HCH5g0141 | 772 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 491 | 503 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH5g0141 | 772 | SUPERFAMILY | Protein kinase-like (PK-like) | 347 | 644 | IPR011009 | - | |
HCH5g0141 | 772 | ProSiteProfiles | Protein kinase domain profile. | 369 | 644 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH5g0141 | 772 | MobiDBLite | consensus disorder prediction | 750 | 772 | - | - | |
HCH5g0141 | 772 | FunFam | receptor-like serine/threonine-protein kinase ALE2 | 342 | 444 | - | - | |
HCH5g0141 | 772 | MobiDBLite | consensus disorder prediction | 77 | 113 | - | - | |
HCH5g0141 | 772 | Gene3D | Transferase(Phosphotransferase) domain 1 | 445 | 665 | - | - | |
HCH5g0141 | 772 | Gene3D | Phosphorylase Kinase; domain 1 | 343 | 444 | - | - | |
HCH5g0141 | 772 | ProSitePatterns | Protein kinases ATP-binding region signature. | 375 | 397 | IPR017441 | GO:0005524(InterPro) | |
HCH5g0141 | 772 | CDD | STKc_IRAK | 375 | 644 | - | - | |
HCH5g0141 | 772 | PANTHER | OS01G0750732 PROTEIN | 119 | 666 | IPR050885 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH4g1481 | HCH-Chr4:11199573 | HCH5g0141 | HCH-Chr5:841047 | 1.60E-169 | dispersed | |
HCH5g0141 | HCH-Chr5:841047 | HCH6g0442 | HCH-Chr6:12270439 | 2.60E-107 | dispersed | |
HCH7g0995 | HCH-Chr7:40803401 | HCH5g0141 | HCH-Chr5:841047 | 1.00E-70 | dispersed | |
HCH5g0141 | HCH-Chr5:841047 | HCH8g0646 | HCH-Chr8:43267767 | 6.80E-180 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81499 | PF07714 | PK_Tyr_Ser-Thr | 3.20E-46 | CL0016 | HCH | PK |
Pathway information
