Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0167 ATGGCGGTTTCTCTAAGATGGTTTTTTACTTCTTGTTCGATATTATTTCTTGTTCTTCAGTTTGTACAATCAAGTAGCGTGGTTGAAACTGAGAGATTTCAGAGCTCCAATCATTCATCAATGGCGGACGGATATATCAAGAATGAGCATGCAGTTGATAACCCAGAAGAAATTGCATCTATGGTTCACACGAGCATTCGTAATAGTACAGAGAGAAGGAATTTGGGATACTTCTCTTGTGGAACAGGGAACCCGATTGATGATTGCTGGCGTTGCGACCCACGTTGGCAAATGCGCCGAAAGCGCCTAGCTGATTGCGGTATCGGGTTTGGTCGTAATGCTGTTGGTGGCCGTGATGGGCGGTACTACGTTGTCTCCGACAACCGTGACGATGACCCGGTTAATCCCCGACCTGGCACCCTTCGTCATGCAGTGATTCAAGATAGGCCTTTGTGGATTGTGTTCAAAAGGGACATGGTCATCACACTAAAACAAGAACTGATCATGAACAGCTTCAAGACAATTGATGGTCGTGGTGCTAACGTCCATATTGCTTATGGGGCTTGCATTACAATCCAATTCATTACCAATGTCATTATTCACGGCCTCCACATTCATGACTGCAAGCCTACGGGTAACGCCATGGTTCGAAGCTCGCCTAGTCATTACGGATGGAGAACGATGGCTGATGGCGATGCCATTTCTATTTTTGGATCAAGTCACGTTTGGATTGACCACAATTCTCTGTCGAATTGTGCAGATGGCCTCGTTGATGCTGTGATGGGATCGACTGCATTAACGATTTCTAACAACTACTTCACCCACCACAATGAGGTAATGCTATTGGGTCATAGTGACTCTTATGTAAGAGACAAGCAAATGCAAGTGACCATTGCTTATAACCATTTTGGAGAAGGTCTTATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTGGTAAATAATGACTACACCCATTGGGAAATGTATGCCATTGGTGGAAGTGCTGATCCCACCATTAATAGCCAGGGCAACAGATATCTTGCCCCTGTCAACCCTTTTGCGAAAGAGGTTACAAAGAGGGTCGACACAAACGCGGGCCAATGGAGGCAGTGGAATTGGAGATCAGAGGGGGATCTTCTGCTAAATGGAGCCTATTTCACTCCATCAGGAGCTGGCTCTGCAGCCAGCTATGCCAGAGCCTCAAGCTTAGGAGCCAAGTCCTCTTCCTTGGTCGCCTCTATTACTTCCGGTGCAGGTGCCCTTCCTTGCCGCAGGGGATTCCGTTGTTAA 1299 46.65 MAVSLRWFFTSCSILFLVLQFVQSSSVVETERFQSSNHSSMADGYIKNEHAVDNPEEIASMVHTSIRNSTERRNLGYFSCGTGNPIDDCWRCDPRWQMRRKRLADCGIGFGRNAVGGRDGRYYVVSDNRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHVWIDHNSLSNCADGLVDAVMGSTALTISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPVNPFAKEVTKRVDTNAGQWRQWNWRSEGDLLLNGAYFTPSGAGSAASYARASSLGAKSSSLVASITSGAGALPCRRGFRC 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 965687 969864 - evm.model.ptg000001l.167 HCH5g0167 544319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0167 432 FunFam Pectate lyase 83 425 - -
HCH5g0167 432 Gene3D - 83 425 IPR012334 -
HCH5g0167 432 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
HCH5g0167 432 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
HCH5g0167 432 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
HCH5g0167 432 PRINTS Pollen allergen Amb family signature 403 426 IPR018082 -
HCH5g0167 432 PRINTS Pollen allergen Amb family signature 374 398 IPR018082 -
HCH5g0167 432 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
HCH5g0167 432 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
HCH5g0167 432 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
HCH5g0167 432 PANTHER PECTATE LYASE 18-RELATED 22 429 IPR045032 GO:0030570(InterPro)
HCH5g0167 432 SMART amb_all 158 355 IPR002022 -
HCH5g0167 432 Pfam Pectate lyase 166 347 IPR002022 -
HCH5g0167 432 SUPERFAMILY Pectin lyase-like 61 427 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0367 HCH-Chr13:2441338 HCH5g0167 HCH-Chr5:965687 2.40E-146 dispersed
HCH14g0796 HCH-Chr14:35985595 HCH5g0167 HCH-Chr5:965687 1.50E-119 dispersed
HCH5g0167 HCH-Chr5:965687 HCH9g0554 HCH-Chr9:3632306 1.90E-147 dispersed
HCH5g0167 HCH-Chr5:965687 HCH6g1437 HCH-Chr6:48126885 2.50E-208 wgd
HCH5g0167 HCH-Chr5:965687 HCH7g1401 HCH-Chr7:46751094 1.00E-209 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0167 K01728 - csv:101207204 766.533