Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH5g0167 | ATGGCGGTTTCTCTAAGATGGTTTTTTACTTCTTGTTCGATATTATTTCTTGTTCTTCAGTTTGTACAATCAAGTAGCGTGGTTGAAACTGAGAGATTTCAGAGCTCCAATCATTCATCAATGGCGGACGGATATATCAAGAATGAGCATGCAGTTGATAACCCAGAAGAAATTGCATCTATGGTTCACACGAGCATTCGTAATAGTACAGAGAGAAGGAATTTGGGATACTTCTCTTGTGGAACAGGGAACCCGATTGATGATTGCTGGCGTTGCGACCCACGTTGGCAAATGCGCCGAAAGCGCCTAGCTGATTGCGGTATCGGGTTTGGTCGTAATGCTGTTGGTGGCCGTGATGGGCGGTACTACGTTGTCTCCGACAACCGTGACGATGACCCGGTTAATCCCCGACCTGGCACCCTTCGTCATGCAGTGATTCAAGATAGGCCTTTGTGGATTGTGTTCAAAAGGGACATGGTCATCACACTAAAACAAGAACTGATCATGAACAGCTTCAAGACAATTGATGGTCGTGGTGCTAACGTCCATATTGCTTATGGGGCTTGCATTACAATCCAATTCATTACCAATGTCATTATTCACGGCCTCCACATTCATGACTGCAAGCCTACGGGTAACGCCATGGTTCGAAGCTCGCCTAGTCATTACGGATGGAGAACGATGGCTGATGGCGATGCCATTTCTATTTTTGGATCAAGTCACGTTTGGATTGACCACAATTCTCTGTCGAATTGTGCAGATGGCCTCGTTGATGCTGTGATGGGATCGACTGCATTAACGATTTCTAACAACTACTTCACCCACCACAATGAGGTAATGCTATTGGGTCATAGTGACTCTTATGTAAGAGACAAGCAAATGCAAGTGACCATTGCTTATAACCATTTTGGAGAAGGTCTTATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTGGTAAATAATGACTACACCCATTGGGAAATGTATGCCATTGGTGGAAGTGCTGATCCCACCATTAATAGCCAGGGCAACAGATATCTTGCCCCTGTCAACCCTTTTGCGAAAGAGGTTACAAAGAGGGTCGACACAAACGCGGGCCAATGGAGGCAGTGGAATTGGAGATCAGAGGGGGATCTTCTGCTAAATGGAGCCTATTTCACTCCATCAGGAGCTGGCTCTGCAGCCAGCTATGCCAGAGCCTCAAGCTTAGGAGCCAAGTCCTCTTCCTTGGTCGCCTCTATTACTTCCGGTGCAGGTGCCCTTCCTTGCCGCAGGGGATTCCGTTGTTAA | 1299 | 46.65 | MAVSLRWFFTSCSILFLVLQFVQSSSVVETERFQSSNHSSMADGYIKNEHAVDNPEEIASMVHTSIRNSTERRNLGYFSCGTGNPIDDCWRCDPRWQMRRKRLADCGIGFGRNAVGGRDGRYYVVSDNRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHVWIDHNSLSNCADGLVDAVMGSTALTISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPVNPFAKEVTKRVDTNAGQWRQWNWRSEGDLLLNGAYFTPSGAGSAASYARASSLGAKSSSLVASITSGAGALPCRRGFRC | 432 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 965687 | 969864 | - | evm.model.ptg000001l.167 | HCH5g0167 | 544319 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH5g0167 | 432 | FunFam | Pectate lyase | 83 | 425 | - | - | |
HCH5g0167 | 432 | Gene3D | - | 83 | 425 | IPR012334 | - | |
HCH5g0167 | 432 | PRINTS | Pollen allergen Amb family signature | 230 | 251 | IPR018082 | - | |
HCH5g0167 | 432 | PRINTS | Pollen allergen Amb family signature | 106 | 123 | IPR018082 | - | |
HCH5g0167 | 432 | PRINTS | Pollen allergen Amb family signature | 332 | 351 | IPR018082 | - | |
HCH5g0167 | 432 | PRINTS | Pollen allergen Amb family signature | 403 | 426 | IPR018082 | - | |
HCH5g0167 | 432 | PRINTS | Pollen allergen Amb family signature | 374 | 398 | IPR018082 | - | |
HCH5g0167 | 432 | PRINTS | Pollen allergen Amb family signature | 130 | 155 | IPR018082 | - | |
HCH5g0167 | 432 | PRINTS | Pollen allergen Amb family signature | 166 | 182 | IPR018082 | - | |
HCH5g0167 | 432 | PRINTS | Pollen allergen Amb family signature | 310 | 329 | IPR018082 | - | |
HCH5g0167 | 432 | PANTHER | PECTATE LYASE 18-RELATED | 22 | 429 | IPR045032 | GO:0030570(InterPro) | |
HCH5g0167 | 432 | SMART | amb_all | 158 | 355 | IPR002022 | - | |
HCH5g0167 | 432 | Pfam | Pectate lyase | 166 | 347 | IPR002022 | - | |
HCH5g0167 | 432 | SUPERFAMILY | Pectin lyase-like | 61 | 427 | IPR011050 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g0367 | HCH-Chr13:2441338 | HCH5g0167 | HCH-Chr5:965687 | 2.40E-146 | dispersed | |
HCH14g0796 | HCH-Chr14:35985595 | HCH5g0167 | HCH-Chr5:965687 | 1.50E-119 | dispersed | |
HCH5g0167 | HCH-Chr5:965687 | HCH9g0554 | HCH-Chr9:3632306 | 1.90E-147 | dispersed | |
HCH5g0167 | HCH-Chr5:965687 | HCH6g1437 | HCH-Chr6:48126885 | 2.50E-208 | wgd | |
HCH5g0167 | HCH-Chr5:965687 | HCH7g1401 | HCH-Chr7:46751094 | 1.00E-209 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH5g0167 | K01728 | - | csv:101207204 | 766.533 |