Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0187 ATGAGTGGAGAGAACAAGGTTTTCACTCTGGCTGAGGTTGCCTCCCACGACACTCGCAATGACTGCTGGTTGATCATTGAGAATAAGGTTTATGATGTAACAAAATTCCTAGAAGACCATCCCGGTGGCGATGAAGTCTTGTTGTCTGCCATAGGTAAGGATGCAACTAATGATTTCGACGACGTTGGACACAGTAGCGCTGCAAGAGCTATGATGGACGAATTCTATGTAGGGGATATTGATAGCTCGACGATTCCTGCAAAACGGAAGTACACTCCTCCCAAGCAGCCACTGTATAACCAAGACAAGACACGGGAATTCGTTATCAAGGTCCTCCAGTTTCTAGTTCCCCTGGTAATTTTGTGTTCGGCTTTCAGCATCCACCTCTTTACCAAGACATCATAA 405 45.68 MSGENKVFTLAEVASHDTRNDCWLIIENKVYDVTKFLEDHPGGDEVLLSAIGKDATNDFDDVGHSSAARAMMDEFYVGDIDSSTIPAKRKYTPPKQPLYNQDKTREFVIKVLQFLVPLVILCSAFSIHLFTKTS 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1065721 1066966 - evm.model.ptg000001l.187 HCH5g0187 544339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0187 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
HCH5g0187 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
HCH5g0187 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 3 91 IPR036400 -
HCH5g0187 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
HCH5g0187 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
HCH5g0187 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
HCH5g0187 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
HCH5g0187 134 SMART Cyt_b5_2 8 81 IPR001199 -
HCH5g0187 134 FunFam Cytochrome b5 type B 2 85 - -
HCH5g0187 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
HCH5g0187 134 PANTHER CYTOCHROME B5 4 118 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
HCH5g0187 134 Gene3D - 2 84 IPR036400 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0187 HCH-Chr5:1065721 HCH5g0902 HCH-Chr5:7492597 6.70E-43 dispersed
HCH10g0497 HCH-Chr10:4048577 HCH5g0187 HCH-Chr5:1065721 6.50E-18 transposed
HCH13g1102 HCH-Chr13:36055262 HCH5g0187 HCH-Chr5:1065721 6.60E-10 transposed
HCH5g0187 HCH-Chr5:1065721 HCH7g1423 HCH-Chr7:46974718 2.50E-50 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0187 K23490 - csv:101212882 231.491