Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0187 ATGAGTGGAGAGAACAAGGTTTTCACTCTGGCTGAGGTTGCCTCCCACGACACTCGCAATGACTGCTGGTTGATCATTGAGAATAAGGTTTATGATGTAACAAAATTCCTAGAAGACCATCCCGGTGGCGATGAAGTCTTGTTGTCTGCCATAGGTAAGGATGCAACTAATGATTTCGACGACGTTGGACACAGTAGCGCTGCAAGAGCTATGATGGACGAATTCTATGTAGGGGATATTGATAGCTCGACGATTCCTGCAAAACGGAAGTACACTCCTCCCAAGCAGCCACTGTATAACCAAGACAAGACACGGGAATTCGTTATCAAGGTCCTCCAGTTTCTAGTTCCCCTGGTAATTTTGTGTTCGGCTTTCAGCATCCACCTCTTTACCAAGACATCATAA 405 45.68 MSGENKVFTLAEVASHDTRNDCWLIIENKVYDVTKFLEDHPGGDEVLLSAIGKDATNDFDDVGHSSAARAMMDEFYVGDIDSSTIPAKRKYTPPKQPLYNQDKTREFVIKVLQFLVPLVILCSAFSIHLFTKTS 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1065721 1066966 - evm.model.ptg000001l.187 HCH5g0187 544339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0187 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
HCH5g0187 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
HCH5g0187 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 3 91 IPR036400 -
HCH5g0187 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
HCH5g0187 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
HCH5g0187 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
HCH5g0187 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
HCH5g0187 134 SMART Cyt_b5_2 8 81 IPR001199 -
HCH5g0187 134 FunFam Cytochrome b5 type B 2 85 - -
HCH5g0187 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
HCH5g0187 134 PANTHER CYTOCHROME B5 4 118 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
HCH5g0187 134 Gene3D - 2 84 IPR036400 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0187 K23490 - - csv:101212882 231.491
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0187 HCH-Chr5:1065721 HCH5g0902 HCH-Chr5:7492597 6.70E-43 dispersed
HCH10g0497 HCH-Chr10:4048577 HCH5g0187 HCH-Chr5:1065721 6.50E-18 transposed
HCH13g1102 HCH-Chr13:36055262 HCH5g0187 HCH-Chr5:1065721 6.60E-10 transposed
HCH5g0187 HCH-Chr5:1065721 HCH7g1423 HCH-Chr7:46974718 2.50E-50 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH5g0902 . 1 134 NADPH P450 reductases AT5G53560 77.6 2.2e-57 218.4
HCH7g1423 . 1 133 NADPH P450 reductases AT5G53560 66.9 7.5e-50 193.4
HCH5g0187 . 1 134 NADPH P450 reductases AT5G53560 61.2 1.1e-45 179.5
HCH7g1737 . 1 136 NADPH P450 reductases AT5G53560 57.4 5.4e-40 160.6
HCH7g1423 . 1 133 NADPH P450 reductases AT5G48810 66.7 6.0e-50 193.7
HCH5g0187 . 1 134 NADPH P450 reductases AT5G48810 61.8 3.1e-46 181.4
HCH5g0902 . 1 134 NADPH P450 reductases AT5G48810 61.0 4.9e-44 174.1
HCH7g1737 . 1 134 NADPH P450 reductases AT5G48810 54.5 8.1e-39 156.8
HCH7g1423 . 22 133 NADPH P450 reductases AT2G32720 86.6 1.0e-51 199.5
HCH5g0187 . 22 133 NADPH P450 reductases AT2G32720 67.9 5.4e-40 160.6
HCH5g0902 . 22 133 NADPH P450 reductases AT2G32720 63.4 2.3e-38 155.2
HCH10g0497 . 2 115 NADPH P450 reductases AT1G60660 65.0 5.4e-39 157.1
HCH4g0156 . 1 125 NADPH P450 reductases AT1G26340 56.0 4.3e-37 151.0
HCH9g0948 . 3 281 NADPH P450 reductases AT5G17770 82.8 9.5e-132 466.5
HCH11g0670 . 2 280 NADPH P450 reductases AT5G17770 80.0 6.4e-128 453.8
HCH5g0902 . 1 134 NADPH P450 reductases AT5G53560 77.6 2.2e-57 218.4
HCH7g1423 . 1 133 NADPH P450 reductases AT5G53560 66.9 7.5e-50 193.4
HCH5g0187 . 1 134 NADPH P450 reductases AT5G53560 61.2 1.1e-45 179.5
HCH7g1737 . 1 136 NADPH P450 reductases AT5G53560 57.4 5.4e-40 160.6
HCH7g1423 . 1 133 NADPH P450 reductases AT5G48810 66.7 6.0e-50 193.7
HCH5g0187 . 1 134 NADPH P450 reductases AT5G48810 61.8 3.1e-46 181.4
HCH5g0902 . 1 134 NADPH P450 reductases AT5G48810 61.0 4.9e-44 174.1
HCH7g1737 . 1 134 NADPH P450 reductases AT5G48810 54.5 8.1e-39 156.8
HCH7g1423 . 22 133 NADPH P450 reductases AT2G32720 86.6 1.0e-51 199.5
HCH5g0187 . 22 133 NADPH P450 reductases AT2G32720 67.9 5.4e-40 160.6
HCH5g0902 . 22 133 NADPH P450 reductases AT2G32720 63.4 2.3e-38 155.2
HCH10g0497 . 2 115 NADPH P450 reductases AT1G60660 65.0 5.4e-39 157.1
HCH4g0156 . 1 125 NADPH P450 reductases AT1G26340 56.0 4.3e-37 151.0
HCH9g0948 . 3 281 NADPH P450 reductases AT5G17770 82.8 9.5e-132 466.5
HCH11g0670 . 2 280 NADPH P450 reductases AT5G17770 80.0 6.4e-128 453.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156