Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH5g0194 | ATGGCTTTTCTAGAGGTAAAACAGAAATTGCTTGGTGAGATTGAAGCTTTAGGGTTCCCAAGGGCTAGAGTAATCAGAGCACTACACAGTACTGGTAATGTTAGCTCTGAAGATGCAATAAATTGGATCATTGATCATGAAAATGATTCAGATATAGATCAAATGCCCCTGGTAGCAATAGACATTGATATTGAATCTCCCAAACAATTTCATATCACAGAAGATATGAAAAAGAAAGCCAAAGAACTAAGGGATCAAGTACAGAAAGAAAAGGAAAGAGAGGAAAAAAAGTTGGAAAGACAGAGGGAGAAGGATAGGATTCAATCCAATAAAGAACTGCATAGGGCAAAGAAAACTGCAGAAGAAAATGACAGGAAGCGTAATCTAGATTCTAGAAAAGCTGAGAAACGGGAAGAAGAAAAAGCAAGGGAAAAAGTTCTACAGAGACTTGAACAAGATAAAATGGAAAGAAGGGGGAAGCTTGGAATTGCCTCCCAACGACTTGCGGCAAAACCTTCCGCAACTGAAGTCGGGAAAAAAGATGAACTTAAATCACTGAATTCATGGCCACTGCCAGCCATTCCAGTTGGAAAAGCAGATCATATGAGAGAATGTTTAAGGTCTCTTAGGCACCATCACAAGGATGATTCTGATAAAGTAAGAATGGCTTTCCAAACACTTTTGGTATGTGTCCGAAATGTTGCACGAAATCCTGATGAGGAAAGGTTTCGGAAAATCCGACTTAGTAATCCCTTATTCCAGGAAAGAGTTGGGATTTTGAAAGGAGGTGTTGAATTTCTAGAGCTTTGTGGATTTCAGAGAGAAGGAGATTTCTTATTTCTTCCTAGTGATAAAGTTGATAAAGGAGTTTTAGTTGCTGCCGGATCACAGTTGAAATCTGCATTGACAAATCCTTTTTTTGGTGTTCTATAA | 933 | 38.59 | MAFLEVKQKLLGEIEALGFPRARVIRALHSTGNVSSEDAINWIIDHENDSDIDQMPLVAIDIDIESPKQFHITEDMKKKAKELRDQVQKEKEREEKKLERQREKDRIQSNKELHRAKKTAEENDRKRNLDSRKAEKREEEKAREKVLQRLEQDKMERRGKLGIASQRLAAKPSATEVGKKDELKSLNSWPLPAIPVGKADHMRECLRSLRHHHKDDSDKVRMAFQTLLVCVRNVARNPDEERFRKIRLSNPLFQERVGILKGGVEFLELCGFQREGDFLFLPSDKVDKGVLVAAGSQLKSALTNPFFGVL | 310 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 1086086 | 1088537 | + | evm.model.ptg000001l.194 | HCH5g0194 | 544346 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH5g0194 | 310 | MobiDBLite | consensus disorder prediction | 81 | 150 | - | - | |
| HCH5g0194 | 310 | SUPERFAMILY | PUG domain-like | 209 | 306 | IPR036339 | - | |
| HCH5g0194 | 310 | Pfam | PUB domain | 218 | 288 | IPR018997 | - | |
| HCH5g0194 | 310 | Coils | Coil | 133 | 156 | - | - | |
| HCH5g0194 | 310 | Gene3D | - | 8 | 53 | - | - | |
| HCH5g0194 | 310 | SMART | PGNneu | 222 | 283 | - | - | |
| HCH5g0194 | 310 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 5 | 46 | IPR015940 | - | |
| HCH5g0194 | 310 | PANTHER | F13M7.16 PROTEIN | 1 | 310 | - | - | |
| HCH5g0194 | 310 | Gene3D | - | 204 | 299 | - | - | |
| HCH5g0194 | 310 | SUPERFAMILY | UBA-like | 5 | 56 | IPR009060 | GO:0005515(InterPro) | |
| HCH5g0194 | 310 | Coils | Coil | 73 | 108 | - | - | |
| HCH5g0194 | 310 | Pfam | UBA-like domain | 8 | 54 | IPR015940 | - | |
| HCH5g0194 | 310 | CDD | UBA_PUB_plant | 5 | 53 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g1352 | HCH-Chr10:46058276 | HCH5g0194 | HCH-Chr5:1086086 | 3.20E-07 | transposed | |
| HCH5g0194 | HCH-Chr5:1086086 | HCH6g1409 | HCH-Chr6:47927966 | 1.30E-65 | wgd |
Pathway information