Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH5g0205 | ATGGGTTCCGGCGCGGTAAAACAGGCTGAAATACTCAGGCAAGACGGAAATCATTACTTTCAGAAAGGTCGTATTGGAGCCGCCATCGATGCCTATACTGAGGCAATTACTTTATGCCCAAATGTTGCTGTGTATTTGACGAATCGTGCTTTATGTCATCGCAAGCGGAATGATTGGAAAAGGGTGGAGGAGGATTGTCGGAGAGCTCTTCAGCTCGATAAACAATCGGTTAAGGCTCACTATATGTTAGGACTATCATTAATACAAATTAAAGACTATCCAGGAGGAATCAAGCATTTGGAGAAGGCTTTGGAGCTTGGTAGGGGTGCAAACCCCAAGGGTTATATGGTTGAGGAGATATGGCAGGAGCTTTCAAAAGCGAAATTCGAGGAATGGGAACAAGCATCCACCAAACGTTCATGGGAATTGCAAACCTTAAAAGAAGCTTGTGAGGCTGCCCTTGAACAAAAGTATTTTCTTGACAATTCTGAAACAGAAGGGTTCATAGATGATGCTGATTTAGCTCATAAGAAACAATTAAAGGCTCTAAAAAGTGTCTTTGAGAAAGCTGCTGAACCGGATGTGCCATCTGAGGTGCCTGATTACCTTTGTTGTAAAATCACGCTTGATATTCTTCGTGATCCTGTTATCACTCCTAGTGGTGTTACATATGAGAGAGCAGTGATTCTCGACCATTTTCAAAAGGTGGGTAATTTCGATCCCATCACTCGGGAACTGCTCAACGAATCACAGCTAGTACCCAACTTGGCCATAAAGGAAGCCGTAAAAGCATTTCTAGATGAGCATGGTTGGGCTTATAATACAGATTAA | 831 | 42.72 | MGSGAVKQAEILRQDGNHYFQKGRIGAAIDAYTEAITLCPNVAVYLTNRALCHRKRNDWKRVEEDCRRALQLDKQSVKAHYMLGLSLIQIKDYPGGIKHLEKALELGRGANPKGYMVEEIWQELSKAKFEEWEQASTKRSWELQTLKEACEAALEQKYFLDNSETEGFIDDADLAHKKQLKALKSVFEKAAEPDVPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFQKVGNFDPITRELLNESQLVPNLAIKEAVKAFLDEHGWAYNTD | 276 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 1159898 | 1162660 | + | evm.model.ptg000001l.205 | HCH5g0205 | 544357 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH5g0205 | 276 | SMART | Ubox_2 | 202 | 265 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| HCH5g0205 | 276 | CDD | RING-Ubox_CHIP | 199 | 269 | IPR045202 | - | |
| HCH5g0205 | 276 | SUPERFAMILY | TPR-like | 7 | 107 | IPR011990 | GO:0005515(InterPro) | |
| HCH5g0205 | 276 | Gene3D | Tetratricopeptide repeat domain | 3 | 139 | IPR011990 | GO:0005515(InterPro) | |
| HCH5g0205 | 276 | Pfam | Anaphase-promoting complex, cyclosome, subunit 3 | 43 | 103 | - | - | |
| HCH5g0205 | 276 | Pfam | U-box domain | 199 | 271 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| HCH5g0205 | 276 | Pfam | Tetratricopeptide repeat | 19 | 41 | IPR019734 | GO:0005515(InterPro) | |
| HCH5g0205 | 276 | ProSiteProfiles | U-box domain profile. | 198 | 272 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| HCH5g0205 | 276 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE CHIP | 6 | 274 | - | GO:0000209(PANTHER)|GO:0005737(PANTHER)|GO:0006515(PANTHER)|GO:0043161(PANTHER)|GO:0045862(PANTHER)|GO:0051087(PANTHER)|GO:0061630(PANTHER)|GO:0071218(PANTHER) | |
| HCH5g0205 | 276 | SMART | tpr_5 | 9 | 42 | IPR019734 | GO:0005515(InterPro) | |
| HCH5g0205 | 276 | SMART | tpr_5 | 77 | 110 | IPR019734 | GO:0005515(InterPro) | |
| HCH5g0205 | 276 | SMART | tpr_5 | 43 | 76 | IPR019734 | GO:0005515(InterPro) | |
| HCH5g0205 | 276 | SUPERFAMILY | RING/U-box | 191 | 273 | - | - | |
| HCH5g0205 | 276 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 197 | 275 | IPR013083 | - | |
| HCH5g0205 | 276 | ProSiteProfiles | TPR repeat profile. | 9 | 42 | IPR019734 | GO:0005515(InterPro) |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH5g0205 | K09561 | - | csv:101215457 | 492.271 |