Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0205 ATGGGTTCCGGCGCGGTAAAACAGGCTGAAATACTCAGGCAAGACGGAAATCATTACTTTCAGAAAGGTCGTATTGGAGCCGCCATCGATGCCTATACTGAGGCAATTACTTTATGCCCAAATGTTGCTGTGTATTTGACGAATCGTGCTTTATGTCATCGCAAGCGGAATGATTGGAAAAGGGTGGAGGAGGATTGTCGGAGAGCTCTTCAGCTCGATAAACAATCGGTTAAGGCTCACTATATGTTAGGACTATCATTAATACAAATTAAAGACTATCCAGGAGGAATCAAGCATTTGGAGAAGGCTTTGGAGCTTGGTAGGGGTGCAAACCCCAAGGGTTATATGGTTGAGGAGATATGGCAGGAGCTTTCAAAAGCGAAATTCGAGGAATGGGAACAAGCATCCACCAAACGTTCATGGGAATTGCAAACCTTAAAAGAAGCTTGTGAGGCTGCCCTTGAACAAAAGTATTTTCTTGACAATTCTGAAACAGAAGGGTTCATAGATGATGCTGATTTAGCTCATAAGAAACAATTAAAGGCTCTAAAAAGTGTCTTTGAGAAAGCTGCTGAACCGGATGTGCCATCTGAGGTGCCTGATTACCTTTGTTGTAAAATCACGCTTGATATTCTTCGTGATCCTGTTATCACTCCTAGTGGTGTTACATATGAGAGAGCAGTGATTCTCGACCATTTTCAAAAGGTGGGTAATTTCGATCCCATCACTCGGGAACTGCTCAACGAATCACAGCTAGTACCCAACTTGGCCATAAAGGAAGCCGTAAAAGCATTTCTAGATGAGCATGGTTGGGCTTATAATACAGATTAA 831 42.72 MGSGAVKQAEILRQDGNHYFQKGRIGAAIDAYTEAITLCPNVAVYLTNRALCHRKRNDWKRVEEDCRRALQLDKQSVKAHYMLGLSLIQIKDYPGGIKHLEKALELGRGANPKGYMVEEIWQELSKAKFEEWEQASTKRSWELQTLKEACEAALEQKYFLDNSETEGFIDDADLAHKKQLKALKSVFEKAAEPDVPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFQKVGNFDPITRELLNESQLVPNLAIKEAVKAFLDEHGWAYNTD 276
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 1159898 1162660 + evm.model.ptg000001l.205 HCH5g0205 544357
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0205 276 SMART Ubox_2 202 265 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH5g0205 276 CDD RING-Ubox_CHIP 199 269 IPR045202 -
HCH5g0205 276 SUPERFAMILY TPR-like 7 107 IPR011990 GO:0005515(InterPro)
HCH5g0205 276 Gene3D Tetratricopeptide repeat domain 3 139 IPR011990 GO:0005515(InterPro)
HCH5g0205 276 Pfam Anaphase-promoting complex, cyclosome, subunit 3 43 103 - -
HCH5g0205 276 Pfam U-box domain 199 271 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH5g0205 276 Pfam Tetratricopeptide repeat 19 41 IPR019734 GO:0005515(InterPro)
HCH5g0205 276 ProSiteProfiles U-box domain profile. 198 272 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH5g0205 276 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 6 274 - GO:0000209(PANTHER)|GO:0005737(PANTHER)|GO:0006515(PANTHER)|GO:0043161(PANTHER)|GO:0045862(PANTHER)|GO:0051087(PANTHER)|GO:0061630(PANTHER)|GO:0071218(PANTHER)
HCH5g0205 276 SMART tpr_5 9 42 IPR019734 GO:0005515(InterPro)
HCH5g0205 276 SMART tpr_5 77 110 IPR019734 GO:0005515(InterPro)
HCH5g0205 276 SMART tpr_5 43 76 IPR019734 GO:0005515(InterPro)
HCH5g0205 276 SUPERFAMILY RING/U-box 191 273 - -
HCH5g0205 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 275 IPR013083 -
HCH5g0205 276 ProSiteProfiles TPR repeat profile. 9 42 IPR019734 GO:0005515(InterPro)
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0205 K09561 - csv:101215457 492.271