Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0206 ATGGCAAAAACAGGAATGTTTGATTCTGATCCTTCTGTCATTGAAAAAGTTGCAGAATTGAAAAGGGAATTGCAGAGATTGATCGTTTCTATAATTGACGATGATAATTGCTCCACCGACACAATCGATCACGCTAGAGAAATTCTCTTCGCGCTTAAAGAATTGAAATTGAAGAAACGCTTTCGTTCTGCGATTCTTCGTGAGAATCTTCTTTGTCCTGATGAGTTTCGTTGCCCTCTTTCTAGAGAAATCATGAAAGATCCTGTTGTTCTTTCTTCCGGTCAGACGTTTGACAGACCATTCATCCAAAAATGGTTAAAATCTGGAAATAGGATGTGTCCTAGAACAAAGCAAGTTCTTTCACACACTAATCTTATTCCGAATCACTTGATCCGTGAAATGATATCTCAGTGGTGTAAAAGTCGGGGAATTGAATTGCAAGATCCTGTCCATTATCTTGATGATGACATAATAACGGAAGCAGATAGAGATCGTTTTGTTACGTTATTAGAGAAAATGTCTACGACGATTTCTGACCAGAAAGCGTCTGCTAAAGAGCTTCGCATGTTGACGAAGCGGATGCCCTCATTTCGGGCACTTTTTGGTGAGTCTGTTGACGCCATTCCTTTGCTGCTTACTCCACTTTGTGAAGATAAGCCAGAAGGTAGTATTCACACTGATCTCCAAGAAGATGTGATTACGACGCTCTTGAATCTGTCAATTCACGACAACAACAAGAAGCTTGTTGCTGAAACTCCTGAGGTCATACCTCTTTTATTGGAAGCATTGAAATCAGGAAGTATAGAAACAAGGAGCAATGCAGCTGCAACCCTTTTTACTTTATCAGCTCTCGATTCGAACAAAGCGCTGATTGGGAAGTCTGGTGCTTTGAAACCACTTATTGACCTTTTAGACGAGGGGCATCCATCAGCTACTAAAGATGCTGCTTCAGCAATTTTCAATATTTGTATACTGCATGAAAACAAAGCAAGAGCTGTGCGAGATGGTGCTGTTAAAGTGCTTCTGAAGAAGATCATGAACAACATGCACGTTGACGAGTTGTTGGCCATTCTTGCTATGCTTTCAACTCATCCAAAAGCTATTGAAGAAATGGGAGAACTTGGAGCTGTTCCCTTCTTGCTCAGAATTATCAGAGAGAGTCCTTGTTCACGTAAGAAGGAGAACTGCATTGTGATTATCCATGCTATCTGCTTATATGATCGGACAAAGTGGAAGGACATGAGGGAGGAAGAAAAAAGCTATCGAACGATCTCCGAACTTGCCGAGAATGGGACTTCAAGGGCCAAGAGAAAGGCCAGTGGCATACTTGAGAGACTGAACAGGGCAGTTAATGTGACCCATACTGCATAA 1371 41.43 MAKTGMFDSDPSVIEKVAELKRELQRLIVSIIDDDNCSTDTIDHAREILFALKELKLKKRFRSAILRENLLCPDEFRCPLSREIMKDPVVLSSGQTFDRPFIQKWLKSGNRMCPRTKQVLSHTNLIPNHLIREMISQWCKSRGIELQDPVHYLDDDIITEADRDRFVTLLEKMSTTISDQKASAKELRMLTKRMPSFRALFGESVDAIPLLLTPLCEDKPEGSIHTDLQEDVITTLLNLSIHDNNKKLVAETPEVIPLLLEALKSGSIETRSNAAATLFTLSALDSNKALIGKSGALKPLIDLLDEGHPSATKDAASAIFNICILHENKARAVRDGAVKVLLKKIMNNMHVDELLAILAMLSTHPKAIEEMGELGAVPFLLRIIRESPCSRKKENCIVIIHAICLYDRTKWKDMREEEKSYRTISELAENGTSRAKRKASGILERLNRAVNVTHTA 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1164809 1166775 - evm.model.ptg000001l.206 HCH5g0206 544358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0206 456 Pfam Armadillo/beta-catenin-like repeat 286 323 IPR000225 GO:0005515(InterPro)
HCH5g0206 456 Pfam U-box domain 73 142 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH5g0206 456 SUPERFAMILY ARM repeat 166 446 IPR016024 -
HCH5g0206 456 Gene3D - 148 451 IPR011989 -
HCH5g0206 456 SUPERFAMILY RING/U-box 72 149 - -
HCH5g0206 456 CDD RING-Ubox_PUB 73 125 IPR045210 -
HCH5g0206 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 145 IPR013083 -
HCH5g0206 456 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH5g0206 456 PANTHER U BOX DOMAIN-CONTAINING 41 447 - -
HCH5g0206 456 FunFam RING-type E3 ubiquitin transferase 156 452 - -
HCH5g0206 456 SMART Ubox_2 75 138 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH5g0206 456 SMART arm_5 364 405 IPR000225 GO:0005515(InterPro)
HCH5g0206 456 SMART arm_5 284 324 IPR000225 GO:0005515(InterPro)
HCH5g0206 456 SMART arm_5 242 283 IPR000225 GO:0005515(InterPro)
HCH5g0206 456 FunFam RING-type E3 ubiquitin transferase 71 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0206 HCH-Chr5:1164809 HCH9g0828 HCH-Chr9:5823482 2.20E-37 dispersed
HCH10g0661 HCH-Chr10:5732741 HCH5g0206 HCH-Chr5:1164809 1.80E-92 transposed
HCH13g0793 HCH-Chr13:7612930 HCH5g0206 HCH-Chr5:1164809 1.70E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0206 K27971 - csv:101215688 725.702