Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH5g0206 | ATGGCAAAAACAGGAATGTTTGATTCTGATCCTTCTGTCATTGAAAAAGTTGCAGAATTGAAAAGGGAATTGCAGAGATTGATCGTTTCTATAATTGACGATGATAATTGCTCCACCGACACAATCGATCACGCTAGAGAAATTCTCTTCGCGCTTAAAGAATTGAAATTGAAGAAACGCTTTCGTTCTGCGATTCTTCGTGAGAATCTTCTTTGTCCTGATGAGTTTCGTTGCCCTCTTTCTAGAGAAATCATGAAAGATCCTGTTGTTCTTTCTTCCGGTCAGACGTTTGACAGACCATTCATCCAAAAATGGTTAAAATCTGGAAATAGGATGTGTCCTAGAACAAAGCAAGTTCTTTCACACACTAATCTTATTCCGAATCACTTGATCCGTGAAATGATATCTCAGTGGTGTAAAAGTCGGGGAATTGAATTGCAAGATCCTGTCCATTATCTTGATGATGACATAATAACGGAAGCAGATAGAGATCGTTTTGTTACGTTATTAGAGAAAATGTCTACGACGATTTCTGACCAGAAAGCGTCTGCTAAAGAGCTTCGCATGTTGACGAAGCGGATGCCCTCATTTCGGGCACTTTTTGGTGAGTCTGTTGACGCCATTCCTTTGCTGCTTACTCCACTTTGTGAAGATAAGCCAGAAGGTAGTATTCACACTGATCTCCAAGAAGATGTGATTACGACGCTCTTGAATCTGTCAATTCACGACAACAACAAGAAGCTTGTTGCTGAAACTCCTGAGGTCATACCTCTTTTATTGGAAGCATTGAAATCAGGAAGTATAGAAACAAGGAGCAATGCAGCTGCAACCCTTTTTACTTTATCAGCTCTCGATTCGAACAAAGCGCTGATTGGGAAGTCTGGTGCTTTGAAACCACTTATTGACCTTTTAGACGAGGGGCATCCATCAGCTACTAAAGATGCTGCTTCAGCAATTTTCAATATTTGTATACTGCATGAAAACAAAGCAAGAGCTGTGCGAGATGGTGCTGTTAAAGTGCTTCTGAAGAAGATCATGAACAACATGCACGTTGACGAGTTGTTGGCCATTCTTGCTATGCTTTCAACTCATCCAAAAGCTATTGAAGAAATGGGAGAACTTGGAGCTGTTCCCTTCTTGCTCAGAATTATCAGAGAGAGTCCTTGTTCACGTAAGAAGGAGAACTGCATTGTGATTATCCATGCTATCTGCTTATATGATCGGACAAAGTGGAAGGACATGAGGGAGGAAGAAAAAAGCTATCGAACGATCTCCGAACTTGCCGAGAATGGGACTTCAAGGGCCAAGAGAAAGGCCAGTGGCATACTTGAGAGACTGAACAGGGCAGTTAATGTGACCCATACTGCATAA | 1371 | 41.43 | MAKTGMFDSDPSVIEKVAELKRELQRLIVSIIDDDNCSTDTIDHAREILFALKELKLKKRFRSAILRENLLCPDEFRCPLSREIMKDPVVLSSGQTFDRPFIQKWLKSGNRMCPRTKQVLSHTNLIPNHLIREMISQWCKSRGIELQDPVHYLDDDIITEADRDRFVTLLEKMSTTISDQKASAKELRMLTKRMPSFRALFGESVDAIPLLLTPLCEDKPEGSIHTDLQEDVITTLLNLSIHDNNKKLVAETPEVIPLLLEALKSGSIETRSNAAATLFTLSALDSNKALIGKSGALKPLIDLLDEGHPSATKDAASAIFNICILHENKARAVRDGAVKVLLKKIMNNMHVDELLAILAMLSTHPKAIEEMGELGAVPFLLRIIRESPCSRKKENCIVIIHAICLYDRTKWKDMREEEKSYRTISELAENGTSRAKRKASGILERLNRAVNVTHTA | 456 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1164809 | 1166775 | - | evm.model.ptg000001l.206 | HCH5g0206 | 544358 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH5g0206 | 456 | Pfam | Armadillo/beta-catenin-like repeat | 286 | 323 | IPR000225 | GO:0005515(InterPro) | |
HCH5g0206 | 456 | Pfam | U-box domain | 73 | 142 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
HCH5g0206 | 456 | SUPERFAMILY | ARM repeat | 166 | 446 | IPR016024 | - | |
HCH5g0206 | 456 | Gene3D | - | 148 | 451 | IPR011989 | - | |
HCH5g0206 | 456 | SUPERFAMILY | RING/U-box | 72 | 149 | - | - | |
HCH5g0206 | 456 | CDD | RING-Ubox_PUB | 73 | 125 | IPR045210 | - | |
HCH5g0206 | 456 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 145 | IPR013083 | - | |
HCH5g0206 | 456 | ProSiteProfiles | U-box domain profile. | 71 | 145 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
HCH5g0206 | 456 | PANTHER | U BOX DOMAIN-CONTAINING | 41 | 447 | - | - | |
HCH5g0206 | 456 | FunFam | RING-type E3 ubiquitin transferase | 156 | 452 | - | - | |
HCH5g0206 | 456 | SMART | Ubox_2 | 75 | 138 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
HCH5g0206 | 456 | SMART | arm_5 | 364 | 405 | IPR000225 | GO:0005515(InterPro) | |
HCH5g0206 | 456 | SMART | arm_5 | 284 | 324 | IPR000225 | GO:0005515(InterPro) | |
HCH5g0206 | 456 | SMART | arm_5 | 242 | 283 | IPR000225 | GO:0005515(InterPro) | |
HCH5g0206 | 456 | FunFam | RING-type E3 ubiquitin transferase | 71 | 145 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH5g0206 | HCH-Chr5:1164809 | HCH9g0828 | HCH-Chr9:5823482 | 2.20E-37 | dispersed | |
HCH10g0661 | HCH-Chr10:5732741 | HCH5g0206 | HCH-Chr5:1164809 | 1.80E-92 | transposed | |
HCH13g0793 | HCH-Chr13:7612930 | HCH5g0206 | HCH-Chr5:1164809 | 1.70E-07 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH5g0206 | K27971 | - | csv:101215688 | 725.702 |