Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0222 ATGTCTCTTCTCAGTAGATTCTTTTACAGAAGACCTCCTGATGGTTTGCTCGAATTTGTTGAACGAGTTTACATTTTCGATTCGTGTTTCTCTACTGAAGTGTTGCCTGATGGAATGTATCAAATATATTTACATGAAATCATCAATGAATTACATGAGGAATTTCCGGGTTCTTCGTTCCTCGCTTTTAATTTCCGTGAAGGGGAGAAAAGGAGTCAGTTTGCGGAAATACTGTGTGAATATGATGTTACTGTTATGGATTATCCTAGACAGTATGAAGGTTGCCCGCTTCTTCCGTTGTCGTTAGTACAACATTTCCTTCGTGTTTGCGAGAGTTGGCTTTTGCTTGGTAATCAACAAAATGTTGTTCTTCTTCATTGTGAGAGGGGAGGTTGGCCACTGTTGGCATTCCTTTTGGCTAGCTTTTTGATATTTAGGAAATTGCATAGTGGTGAGAGAAAAACTCTTGAAATTGTACACCGAGAAGCTCCAAAAGGGTATTTGCAGCTTTTGTCGCCTTTGAACCCGTTCCCGTCTCAACTTCGCTACTTGCAGTATGTTGCAAGGAGAAATATAGTTTCTGAGTGGCCACCGCCTGAGCGAGCACTTTCTTTGGATTGTGTAATTCTTCGATCCATTCCGGGTTTTGATTCTCAGAATGGATGCAGACCGGTTATTCGTGTTTTTGGGAGGAATCTTTTTAGCAAGGGTGGGCTTTCCACACAGATGCTTTTCACCATGCCCAAGAAGAACAAGGCCCTTCGTCACTACCGTCAGGCTGATTGTGATGTGATTAAAATAGATGTACAGTGTATGGTTCAAGGAGATGTAGTGTTGGAGTGTTCACATCTGGAATTGGAACCAGAAAGGGAAGTGATGATGTTTCGCATTATGTTCAATACAGCATTTATTCGATCAAACATATTGATGCTCAACTCTGAAAACTTGGACATTCTTTGGGATGCAAAGGAGCGGTATCCAAAAGGTTTCCGAGCTGAGGTTTTGTTCGGGGAGTTCGAAAATGTCTCCCCTCCAAGGGCTCAAACCACAATTCTGAATGGTGAAGAGAAAGGTGGGTTACCAATTGAAGCTTTTTCCAGGGTTCAAGAACTTTTTAGTGGTGTTGAGTGGTTTGATAGCAATGACGATGCTGCCATGTGGTTACTCAAGAATTTTTCTATCTTAAGTGACGTGAAAGAATTGTCAAGATTGCAAAATAAAACAAGTTCATATTCGTCGCCTGTGGATTCTGAAGAGGAGAACAATACATCCAGCACTGCTGATAGTTCAGATGAAGTATTTGATGTCATCTCCAAGCCTTTACTTGATTCAAATTTTACAAATTTTGCAAGTCTGGATATGGTAGACTCTTCCCCTCTATCTTCTAGCAAGTTTGGTGCTAATGAAGGGAATATGTCCTCAGAATCTCCTCAAAGTTCTGATGAATGTGCTGAAAAAATATTTTTGTCTAAAGAATCTCTACCTTCTTCAGCACCTCCACCCACTTCTTTTGGCTCCCCTCTCCCACCTCCTCCCCCTCCTTCTGAAAGTTCTTTACCAGCTTCTCAATTTCCAGCTCCTTCGGTGAATACTGGTGGAGAACCTCCTTCAATATCCCCACCACCCCTACCTCCACCACCTCCACCTCCACCTCCACCTTCACCTCCTCCAACCTTTACTATTGATAGTAGGGAGCGTGTCCCTGATAAAATGTCTATAAATCCTTCACCATATATGACTAATACTGTTCCTCCTCCACCGCCACCTCCTCCTTTGTCTTTGCCATCTTTGAGTTCAAAATCCACCTTTAGTACAGAGCCCGGGAGACCCCCTCCTCCCCCTCCACTCCCACATCAGCATTCTACCATTAATAATTCTAGTACTCCCTCTTTGACTCCAACACCTCATGTTCAAAAATCTTCTAGTGCTCCACCTGCACCACCACCACCACCACCTCCTCCTATTCAAAGATCTTCTGGTCCACCTCCACCTCCTCATCCTATCCAAAGAACTTTTGTTGCTCCACCTCCGCCTCCACCTCCTCCCCCCGTTCAACGAACTTCTGGTGCTCCACCTCCGCCTCCACCTCCTCCACCCATTCAAAGAACTTCTGGTGCTCCTCCACCTCCACCACCTCCACCTATTCAAAGATCTTCTAGCACTCCGCCGCCTCCTCCACCACCTCCTCCACCTATTCAAAGATCTTCTAGCACTCCTCCGCCTCCACCTCCACCTCCTCTTCTTAAAAAAACTTCTAGTGCTCCTCCGCTTCTTCCTACACAATCAAATCATGGTACAACACCTGTTCCACCCCCTCCACCACCAAAACCTCTTGTTGCTTCATCGCTACCAAGTCATGCCACTAAGTCGACTACACCTCCTCCTCCTCCTCCACCAATGAAATCCTCTCCTGCTCCTCCACCGTTGCCAAGCCATGGTGCTACACCCGCTCCGCCCCCTCCCCCTGGATCAAGAGTTTCAAATGTGCCACCACCACCCCCTCCTTCAGTTGGAAAGGGGAGAGTTTCTGCTGGATCAGGAAGTCAAGGAAGAGGTCGAGTTGCTACAGGAGCTGTAAATGCCCCTAAGAAAACCTCATTAAAACCATTGCATTGGGTAAAAGTTACTCGAGCAATGCAGGGGAGTTTATGGGCTGACTCTCAAAAGCAGGAAAATCAATCAAGGGCCCCAGAAATAGACATCTCTGAACTCGAAAGTCTATTCTCAGCAGCTTCTGCTTCAGATGGAAGTGGCAGTAGAGGTGGAGGACGACGTGGTTCGAATATCAACAAACCTGAAAAAGTGCAATTGGTTGACTTGCGAAGAGCATATAACTGCGAAATAATGCTCTCAAAAATAAAGTTTCCTCTGCCAGATATGATGAATGCAGTTCTTGCACTGGATTCTTCTGCTCTTGATATTGACCAGGTTGAGAATCTCATTAAATTTTGTCCTACGAGGGAAGAGATGGAAACACTTAAGAATTATGCAGGTGACAGAGAAATGCTTGGAAAATGTGAGCAGTTTTTTCTTGAGCTCATGAAGGTTCCACGAATAGAGTCCAAGTTACGGGTATTTGCCTTCAAAATCACCTTTTCTAGCCAGGTGAATGATCTGAGATATAATTTAAACACAATAAATGGTGCTACTAGAGAGGTAAAAGAATCGACAAAATTGCGTCAAATAATGCAAACAATTCTTACGTTGGGAAATGCGTTGAACCAGGGCACTGCTCGAGGTTCTGCCATAGGATTTAAATTAGACAGCCTTCTTAAATTATCCGACACTCGTGCAAGAAACAACAAAATGACATTAATGCATTATTTATGTAAGCTCCTTGCAGAGAAAATGCCAGAGTTACTCGATTTCGATAAGGATCTTGTTCATTTAGAAGCTGCCTCTAAGATTCAACTGAAAGCATTGGCTGAAGAAATGCAAGCAGTGAGTAAAGGTCTTGAAAAGGTGGAGCAAGAGCTAACTGCTTCAGAAAATGATGGTGCTGTGTCTGTTGGTTTCCAAAGGGTGTTGAAGAATTTCCTTGATACTGCTGAAGCTGAAGTAAGGGCACTTATCTCCTTATATTCTGAAGTGGGGAGAAATGCGGATTCGTTGTCCCAGTACTTTGGGGAAGACCCAGCTCGGTGTCCCTTTGAGCAAGTGACCCAAATTTTGAATGTCTTCGTTAAAATGTTCAAAAAGTCACGAGAAGAAAATGATCGGCTGGCTGATGCTGAAAAGAAAAAAATTGAGAAGGAAGCCATGAAAGAACGGAGTTCAGTTAAAGCAAAGTAA 3792 43.99 MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTEVLPDGMYQIYLHEIINELHEEFPGSSFLAFNFREGEKRSQFAEILCEYDVTVMDYPRQYEGCPLLPLSLVQHFLRVCESWLLLGNQQNVVLLHCERGGWPLLAFLLASFLIFRKLHSGERKTLEIVHREAPKGYLQLLSPLNPFPSQLRYLQYVARRNIVSEWPPPERALSLDCVILRSIPGFDSQNGCRPVIRVFGRNLFSKGGLSTQMLFTMPKKNKALRHYRQADCDVIKIDVQCMVQGDVVLECSHLELEPEREVMMFRIMFNTAFIRSNILMLNSENLDILWDAKERYPKGFRAEVLFGEFENVSPPRAQTTILNGEEKGGLPIEAFSRVQELFSGVEWFDSNDDAAMWLLKNFSILSDVKELSRLQNKTSSYSSPVDSEEENNTSSTADSSDEVFDVISKPLLDSNFTNFASLDMVDSSPLSSSKFGANEGNMSSESPQSSDECAEKIFLSKESLPSSAPPPTSFGSPLPPPPPPSESSLPASQFPAPSVNTGGEPPSISPPPLPPPPPPPPPPSPPPTFTIDSRERVPDKMSINPSPYMTNTVPPPPPPPPLSLPSLSSKSTFSTEPGRPPPPPPLPHQHSTINNSSTPSLTPTPHVQKSSSAPPAPPPPPPPPIQRSSGPPPPPHPIQRTFVAPPPPPPPPPVQRTSGAPPPPPPPPPIQRTSGAPPPPPPPPIQRSSSTPPPPPPPPPPIQRSSSTPPPPPPPPLLKKTSSAPPLLPTQSNHGTTPVPPPPPPKPLVASSLPSHATKSTTPPPPPPPMKSSPAPPPLPSHGATPAPPPPPGSRVSNVPPPPPPSVGKGRVSAGSGSQGRGRVATGAVNAPKKTSLKPLHWVKVTRAMQGSLWADSQKQENQSRAPEIDISELESLFSAASASDGSGSRGGGRRGSNINKPEKVQLVDLRRAYNCEIMLSKIKFPLPDMMNAVLALDSSALDIDQVENLIKFCPTREEMETLKNYAGDREMLGKCEQFFLELMKVPRIESKLRVFAFKITFSSQVNDLRYNLNTINGATREVKESTKLRQIMQTILTLGNALNQGTARGSAIGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELTASENDGAVSVGFQRVLKNFLDTAEAEVRALISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILNVFVKMFKKSREENDRLADAEKKKIEKEAMKERSSVKAK 1263
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 1265054 1273355 - evm.model.ptg000001l.222 HCH5g0222 544374
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0222 1263 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 19 187 IPR029021 -
HCH5g0222 1263 MobiDBLite consensus disorder prediction 500 520 - -
HCH5g0222 1263 MobiDBLite consensus disorder prediction 910 930 - -
HCH5g0222 1263 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
HCH5g0222 1263 MobiDBLite consensus disorder prediction 457 483 - -
HCH5g0222 1263 MobiDBLite consensus disorder prediction 408 431 - -
HCH5g0222 1263 MobiDBLite consensus disorder prediction 1236 1263 - -
HCH5g0222 1263 Pfam C2 domain of PTEN tumour-suppressor protein 198 338 IPR014020 -
HCH5g0222 1263 PRINTS Proline rich extensin signature 533 545 - -
HCH5g0222 1263 PRINTS Proline rich extensin signature 545 566 - -
HCH5g0222 1263 PRINTS Proline rich extensin signature 575 591 - -
HCH5g0222 1263 PRINTS Proline rich extensin signature 499 511 - -
HCH5g0222 1263 PRINTS Proline rich extensin signature 513 529 - -
HCH5g0222 1263 SMART PTEN_C2_2 198 338 IPR014020 -
HCH5g0222 1263 Gene3D - 197 342 - -
HCH5g0222 1263 SMART it6_source 606 1263 IPR015425 -
HCH5g0222 1263 SUPERFAMILY Formin homology 2 domain (FH2 domain) 870 1251 - -
HCH5g0222 1263 FunFam Formin-like protein 856 1243 - -
HCH5g0222 1263 Pfam Formin Homology 2 Domain 861 1232 IPR015425 -
HCH5g0222 1263 ProSiteProfiles Formin homology-2 (FH2) domain profile. 857 1257 IPR015425 -
HCH5g0222 1263 MobiDBLite consensus disorder prediction 457 863 - -
HCH5g0222 1263 MobiDBLite consensus disorder prediction 640 752 - -
HCH5g0222 1263 Coils Coil 1138 1165 - -
HCH5g0222 1263 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
HCH5g0222 1263 PANTHER FORMIN-J 758 1255 IPR051144 -
HCH5g0222 1263 MobiDBLite consensus disorder prediction 910 924 - -
HCH5g0222 1263 MobiDBLite consensus disorder prediction 765 780 - -
HCH5g0222 1263 Coils Coil 1234 1254 - -
HCH5g0222 1263 Gene3D Formin, FH2 domain 856 1241 IPR042201 -
HCH5g0222 1263 MobiDBLite consensus disorder prediction 789 838 - -
HCH5g0222 1263 MobiDBLite consensus disorder prediction 534 559 - -
HCH5g0222 1263 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 339 IPR035892 -
HCH5g0222 1263 MobiDBLite consensus disorder prediction 620 639 - -
HCH5g0222 1263 MobiDBLite consensus disorder prediction 579 595 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0222 HCH-Chr5:1265054 HCH8g0927 HCH-Chr8:45586913 3.60E-247 dispersed
HCH5g0222 HCH-Chr5:1265054 HCH12g0414 HCH-Chr12:2400867 2.50E-256 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0222 K28090 - csv:101217517 941.414