Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH5g0222 | ATGTCTCTTCTCAGTAGATTCTTTTACAGAAGACCTCCTGATGGTTTGCTCGAATTTGTTGAACGAGTTTACATTTTCGATTCGTGTTTCTCTACTGAAGTGTTGCCTGATGGAATGTATCAAATATATTTACATGAAATCATCAATGAATTACATGAGGAATTTCCGGGTTCTTCGTTCCTCGCTTTTAATTTCCGTGAAGGGGAGAAAAGGAGTCAGTTTGCGGAAATACTGTGTGAATATGATGTTACTGTTATGGATTATCCTAGACAGTATGAAGGTTGCCCGCTTCTTCCGTTGTCGTTAGTACAACATTTCCTTCGTGTTTGCGAGAGTTGGCTTTTGCTTGGTAATCAACAAAATGTTGTTCTTCTTCATTGTGAGAGGGGAGGTTGGCCACTGTTGGCATTCCTTTTGGCTAGCTTTTTGATATTTAGGAAATTGCATAGTGGTGAGAGAAAAACTCTTGAAATTGTACACCGAGAAGCTCCAAAAGGGTATTTGCAGCTTTTGTCGCCTTTGAACCCGTTCCCGTCTCAACTTCGCTACTTGCAGTATGTTGCAAGGAGAAATATAGTTTCTGAGTGGCCACCGCCTGAGCGAGCACTTTCTTTGGATTGTGTAATTCTTCGATCCATTCCGGGTTTTGATTCTCAGAATGGATGCAGACCGGTTATTCGTGTTTTTGGGAGGAATCTTTTTAGCAAGGGTGGGCTTTCCACACAGATGCTTTTCACCATGCCCAAGAAGAACAAGGCCCTTCGTCACTACCGTCAGGCTGATTGTGATGTGATTAAAATAGATGTACAGTGTATGGTTCAAGGAGATGTAGTGTTGGAGTGTTCACATCTGGAATTGGAACCAGAAAGGGAAGTGATGATGTTTCGCATTATGTTCAATACAGCATTTATTCGATCAAACATATTGATGCTCAACTCTGAAAACTTGGACATTCTTTGGGATGCAAAGGAGCGGTATCCAAAAGGTTTCCGAGCTGAGGTTTTGTTCGGGGAGTTCGAAAATGTCTCCCCTCCAAGGGCTCAAACCACAATTCTGAATGGTGAAGAGAAAGGTGGGTTACCAATTGAAGCTTTTTCCAGGGTTCAAGAACTTTTTAGTGGTGTTGAGTGGTTTGATAGCAATGACGATGCTGCCATGTGGTTACTCAAGAATTTTTCTATCTTAAGTGACGTGAAAGAATTGTCAAGATTGCAAAATAAAACAAGTTCATATTCGTCGCCTGTGGATTCTGAAGAGGAGAACAATACATCCAGCACTGCTGATAGTTCAGATGAAGTATTTGATGTCATCTCCAAGCCTTTACTTGATTCAAATTTTACAAATTTTGCAAGTCTGGATATGGTAGACTCTTCCCCTCTATCTTCTAGCAAGTTTGGTGCTAATGAAGGGAATATGTCCTCAGAATCTCCTCAAAGTTCTGATGAATGTGCTGAAAAAATATTTTTGTCTAAAGAATCTCTACCTTCTTCAGCACCTCCACCCACTTCTTTTGGCTCCCCTCTCCCACCTCCTCCCCCTCCTTCTGAAAGTTCTTTACCAGCTTCTCAATTTCCAGCTCCTTCGGTGAATACTGGTGGAGAACCTCCTTCAATATCCCCACCACCCCTACCTCCACCACCTCCACCTCCACCTCCACCTTCACCTCCTCCAACCTTTACTATTGATAGTAGGGAGCGTGTCCCTGATAAAATGTCTATAAATCCTTCACCATATATGACTAATACTGTTCCTCCTCCACCGCCACCTCCTCCTTTGTCTTTGCCATCTTTGAGTTCAAAATCCACCTTTAGTACAGAGCCCGGGAGACCCCCTCCTCCCCCTCCACTCCCACATCAGCATTCTACCATTAATAATTCTAGTACTCCCTCTTTGACTCCAACACCTCATGTTCAAAAATCTTCTAGTGCTCCACCTGCACCACCACCACCACCACCTCCTCCTATTCAAAGATCTTCTGGTCCACCTCCACCTCCTCATCCTATCCAAAGAACTTTTGTTGCTCCACCTCCGCCTCCACCTCCTCCCCCCGTTCAACGAACTTCTGGTGCTCCACCTCCGCCTCCACCTCCTCCACCCATTCAAAGAACTTCTGGTGCTCCTCCACCTCCACCACCTCCACCTATTCAAAGATCTTCTAGCACTCCGCCGCCTCCTCCACCACCTCCTCCACCTATTCAAAGATCTTCTAGCACTCCTCCGCCTCCACCTCCACCTCCTCTTCTTAAAAAAACTTCTAGTGCTCCTCCGCTTCTTCCTACACAATCAAATCATGGTACAACACCTGTTCCACCCCCTCCACCACCAAAACCTCTTGTTGCTTCATCGCTACCAAGTCATGCCACTAAGTCGACTACACCTCCTCCTCCTCCTCCACCAATGAAATCCTCTCCTGCTCCTCCACCGTTGCCAAGCCATGGTGCTACACCCGCTCCGCCCCCTCCCCCTGGATCAAGAGTTTCAAATGTGCCACCACCACCCCCTCCTTCAGTTGGAAAGGGGAGAGTTTCTGCTGGATCAGGAAGTCAAGGAAGAGGTCGAGTTGCTACAGGAGCTGTAAATGCCCCTAAGAAAACCTCATTAAAACCATTGCATTGGGTAAAAGTTACTCGAGCAATGCAGGGGAGTTTATGGGCTGACTCTCAAAAGCAGGAAAATCAATCAAGGGCCCCAGAAATAGACATCTCTGAACTCGAAAGTCTATTCTCAGCAGCTTCTGCTTCAGATGGAAGTGGCAGTAGAGGTGGAGGACGACGTGGTTCGAATATCAACAAACCTGAAAAAGTGCAATTGGTTGACTTGCGAAGAGCATATAACTGCGAAATAATGCTCTCAAAAATAAAGTTTCCTCTGCCAGATATGATGAATGCAGTTCTTGCACTGGATTCTTCTGCTCTTGATATTGACCAGGTTGAGAATCTCATTAAATTTTGTCCTACGAGGGAAGAGATGGAAACACTTAAGAATTATGCAGGTGACAGAGAAATGCTTGGAAAATGTGAGCAGTTTTTTCTTGAGCTCATGAAGGTTCCACGAATAGAGTCCAAGTTACGGGTATTTGCCTTCAAAATCACCTTTTCTAGCCAGGTGAATGATCTGAGATATAATTTAAACACAATAAATGGTGCTACTAGAGAGGTAAAAGAATCGACAAAATTGCGTCAAATAATGCAAACAATTCTTACGTTGGGAAATGCGTTGAACCAGGGCACTGCTCGAGGTTCTGCCATAGGATTTAAATTAGACAGCCTTCTTAAATTATCCGACACTCGTGCAAGAAACAACAAAATGACATTAATGCATTATTTATGTAAGCTCCTTGCAGAGAAAATGCCAGAGTTACTCGATTTCGATAAGGATCTTGTTCATTTAGAAGCTGCCTCTAAGATTCAACTGAAAGCATTGGCTGAAGAAATGCAAGCAGTGAGTAAAGGTCTTGAAAAGGTGGAGCAAGAGCTAACTGCTTCAGAAAATGATGGTGCTGTGTCTGTTGGTTTCCAAAGGGTGTTGAAGAATTTCCTTGATACTGCTGAAGCTGAAGTAAGGGCACTTATCTCCTTATATTCTGAAGTGGGGAGAAATGCGGATTCGTTGTCCCAGTACTTTGGGGAAGACCCAGCTCGGTGTCCCTTTGAGCAAGTGACCCAAATTTTGAATGTCTTCGTTAAAATGTTCAAAAAGTCACGAGAAGAAAATGATCGGCTGGCTGATGCTGAAAAGAAAAAAATTGAGAAGGAAGCCATGAAAGAACGGAGTTCAGTTAAAGCAAAGTAA | 3792 | 43.99 | MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTEVLPDGMYQIYLHEIINELHEEFPGSSFLAFNFREGEKRSQFAEILCEYDVTVMDYPRQYEGCPLLPLSLVQHFLRVCESWLLLGNQQNVVLLHCERGGWPLLAFLLASFLIFRKLHSGERKTLEIVHREAPKGYLQLLSPLNPFPSQLRYLQYVARRNIVSEWPPPERALSLDCVILRSIPGFDSQNGCRPVIRVFGRNLFSKGGLSTQMLFTMPKKNKALRHYRQADCDVIKIDVQCMVQGDVVLECSHLELEPEREVMMFRIMFNTAFIRSNILMLNSENLDILWDAKERYPKGFRAEVLFGEFENVSPPRAQTTILNGEEKGGLPIEAFSRVQELFSGVEWFDSNDDAAMWLLKNFSILSDVKELSRLQNKTSSYSSPVDSEEENNTSSTADSSDEVFDVISKPLLDSNFTNFASLDMVDSSPLSSSKFGANEGNMSSESPQSSDECAEKIFLSKESLPSSAPPPTSFGSPLPPPPPPSESSLPASQFPAPSVNTGGEPPSISPPPLPPPPPPPPPPSPPPTFTIDSRERVPDKMSINPSPYMTNTVPPPPPPPPLSLPSLSSKSTFSTEPGRPPPPPPLPHQHSTINNSSTPSLTPTPHVQKSSSAPPAPPPPPPPPIQRSSGPPPPPHPIQRTFVAPPPPPPPPPVQRTSGAPPPPPPPPPIQRTSGAPPPPPPPPIQRSSSTPPPPPPPPPPIQRSSSTPPPPPPPPLLKKTSSAPPLLPTQSNHGTTPVPPPPPPKPLVASSLPSHATKSTTPPPPPPPMKSSPAPPPLPSHGATPAPPPPPGSRVSNVPPPPPPSVGKGRVSAGSGSQGRGRVATGAVNAPKKTSLKPLHWVKVTRAMQGSLWADSQKQENQSRAPEIDISELESLFSAASASDGSGSRGGGRRGSNINKPEKVQLVDLRRAYNCEIMLSKIKFPLPDMMNAVLALDSSALDIDQVENLIKFCPTREEMETLKNYAGDREMLGKCEQFFLELMKVPRIESKLRVFAFKITFSSQVNDLRYNLNTINGATREVKESTKLRQIMQTILTLGNALNQGTARGSAIGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELTASENDGAVSVGFQRVLKNFLDTAEAEVRALISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILNVFVKMFKKSREENDRLADAEKKKIEKEAMKERSSVKAK | 1263 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1265054 | 1273355 | - | evm.model.ptg000001l.222 | HCH5g0222 | 544374 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH5g0222 | 1263 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 19 | 187 | IPR029021 | - | |
HCH5g0222 | 1263 | MobiDBLite | consensus disorder prediction | 500 | 520 | - | - | |
HCH5g0222 | 1263 | MobiDBLite | consensus disorder prediction | 910 | 930 | - | - | |
HCH5g0222 | 1263 | ProSiteProfiles | C2 tensin-type domain profile. | 200 | 339 | IPR014020 | - | |
HCH5g0222 | 1263 | MobiDBLite | consensus disorder prediction | 457 | 483 | - | - | |
HCH5g0222 | 1263 | MobiDBLite | consensus disorder prediction | 408 | 431 | - | - | |
HCH5g0222 | 1263 | MobiDBLite | consensus disorder prediction | 1236 | 1263 | - | - | |
HCH5g0222 | 1263 | Pfam | C2 domain of PTEN tumour-suppressor protein | 198 | 338 | IPR014020 | - | |
HCH5g0222 | 1263 | PRINTS | Proline rich extensin signature | 533 | 545 | - | - | |
HCH5g0222 | 1263 | PRINTS | Proline rich extensin signature | 545 | 566 | - | - | |
HCH5g0222 | 1263 | PRINTS | Proline rich extensin signature | 575 | 591 | - | - | |
HCH5g0222 | 1263 | PRINTS | Proline rich extensin signature | 499 | 511 | - | - | |
HCH5g0222 | 1263 | PRINTS | Proline rich extensin signature | 513 | 529 | - | - | |
HCH5g0222 | 1263 | SMART | PTEN_C2_2 | 198 | 338 | IPR014020 | - | |
HCH5g0222 | 1263 | Gene3D | - | 197 | 342 | - | - | |
HCH5g0222 | 1263 | SMART | it6_source | 606 | 1263 | IPR015425 | - | |
HCH5g0222 | 1263 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 870 | 1251 | - | - | |
HCH5g0222 | 1263 | FunFam | Formin-like protein | 856 | 1243 | - | - | |
HCH5g0222 | 1263 | Pfam | Formin Homology 2 Domain | 861 | 1232 | IPR015425 | - | |
HCH5g0222 | 1263 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 857 | 1257 | IPR015425 | - | |
HCH5g0222 | 1263 | MobiDBLite | consensus disorder prediction | 457 | 863 | - | - | |
HCH5g0222 | 1263 | MobiDBLite | consensus disorder prediction | 640 | 752 | - | - | |
HCH5g0222 | 1263 | Coils | Coil | 1138 | 1165 | - | - | |
HCH5g0222 | 1263 | Gene3D | Protein tyrosine phosphatase superfamily | 16 | 191 | IPR029021 | - | |
HCH5g0222 | 1263 | PANTHER | FORMIN-J | 758 | 1255 | IPR051144 | - | |
HCH5g0222 | 1263 | MobiDBLite | consensus disorder prediction | 910 | 924 | - | - | |
HCH5g0222 | 1263 | MobiDBLite | consensus disorder prediction | 765 | 780 | - | - | |
HCH5g0222 | 1263 | Coils | Coil | 1234 | 1254 | - | - | |
HCH5g0222 | 1263 | Gene3D | Formin, FH2 domain | 856 | 1241 | IPR042201 | - | |
HCH5g0222 | 1263 | MobiDBLite | consensus disorder prediction | 789 | 838 | - | - | |
HCH5g0222 | 1263 | MobiDBLite | consensus disorder prediction | 534 | 559 | - | - | |
HCH5g0222 | 1263 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 200 | 339 | IPR035892 | - | |
HCH5g0222 | 1263 | MobiDBLite | consensus disorder prediction | 620 | 639 | - | - | |
HCH5g0222 | 1263 | MobiDBLite | consensus disorder prediction | 579 | 595 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH5g0222 | HCH-Chr5:1265054 | HCH8g0927 | HCH-Chr8:45586913 | 3.60E-247 | dispersed | |
HCH5g0222 | HCH-Chr5:1265054 | HCH12g0414 | HCH-Chr12:2400867 | 2.50E-256 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH5g0222 | K28090 | - | csv:101217517 | 941.414 |