Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0231 ATGACAATGCCAACAACAACCTTAAACAGTCAAATAAACTGTCATTCATCAAAAAACAAAACCACCTCTCAGATTCAGACGTCTTCTCATTCTCATTTTTCACCAGAAACTGGAATTTACAGCAGCCATTACTCCTCCGTTCTCTTACCCTCTGACCCATTTCTTGATATTGTCTCTTTCATTTTCTCCTTTAAACATAATGAGGTTTCAGCTTTCATCGATTCCTCATCTGGGTCTTCGATTTCTTACTCAAAATTGTATTTTTTTATCAAATCCATGGCTTTTGGTCTCCACAAAAATTTTGGTATTTCTCAAGGAGATGTGGTTCTTATTTCATTACCAAATTCCATTTTATTTCCCATTATTTTATTAAGTGTTCTTTATCTAGGAGCAATTGTTACAACTATGAATCCTTATAGCAGTTTTTTAGAAATCAAGAAAAGAATTGAAGATTGTAAAGTATGTCTTGCCTTTTCAGTTCCTGAAAAAGTTGAGTTTTTTCAAGCATTGGGAATTCCTGTCGTTGGGGTCCCAGAGAATGTGGATTTTGATTTAAAACCTATGGAATTCTCTGCATTTTATGAGCTCATTTCATTTTCTGGTGATTTTAGTTTAAGTAAAAAACCAAAGATTAAACAACAAGATATAGCTGCTATATTGTATTCATCAGGGACTACTGGTGTTAGTAAAGGGGTTGTATTAACTCATAGAAATTTCATAGCTATGGTTGAGCTTTTTGTGAGATTTGAAGCTTCAAAATATGAGTATTTGAGTGAAAAGAATGTGTATTTAGCTGTTTTACCAATGTTTCATATTTATGGTTTGTCACATTTTGTTATGGGATTATTGTCATTGGGTTCTAGTATTGTTGTAATGAGAAAATTTGATATTAAAGAGGTGGTCAAGGCCATTGATAGATATAATGTCACACATTTTCCAGTTGTTCCACCAATATTGACAACTTTGGTCAAGAGTGCAAAGAAAATCGGTGGACATAGCTTTCATAGTTTGAAACAGGTTTCTTGTGGGGCTGCTCCTTTGAGCAGGAATATCATAGAGGACTTTGTGCAGGCTTACCCCCATGTTGATTTTATTCAGGGATATGGCATGACTGAGTCCACGGCAGTGGCAACTCGTGGCTTCAATACTGAAGATACTCAGAATTATTCCTCAGTAGGACTTTTGGCTCCGAGCATGGAAGCTAAAGTAGTTGATTGGATTAATGGATCTTTCTTGCCTCCAGGTAGATGTGGTGAGCTTCTGTTACGTGGGCCTGCATTGATGAAAGGGTACTTGAATAATACAGAGGCAACAACGTCCACAATAGACCACGAAGCTTGGCTACATACTGGAGATATTGTTTACTTCGACCGAGAAGGGTATCTATACGTTATTGACCGTTTGAAGGAAATGATAAAATACAAAGGCTTTCAGATCGCTCCTGCTGATTTAGAAGCTGTGTTGATAACACATCCAGATGTTCTTGAAGTCGCAGTAGCCGGGGTCGTCGATGAAGAATGTGGGGAGATCCCGGTGGCATTCGTCGTCAAGAAGCCAGGAAGCTCGCTTTCACAAATAGATGTTATGGATTTTGTTGCTAAACAGGTTGCACCTTACAAGAAAATCAGAAGGGTGGTTTTTAAAGAAGCAATTCCAAAGTCCGCCGCGGGGAAGATACTGCGGCGGGAACTGAAGAAGCAGCTGACTTCTAAACTCTGA 1719 38.1 MTMPTTTLNSQINCHSSKNKTTSQIQTSSHSHFSPETGIYSSHYSSVLLPSDPFLDIVSFIFSFKHNEVSAFIDSSSGSSISYSKLYFFIKSMAFGLHKNFGISQGDVVLISLPNSILFPIILLSVLYLGAIVTTMNPYSSFLEIKKRIEDCKVCLAFSVPEKVEFFQALGIPVVGVPENVDFDLKPMEFSAFYELISFSGDFSLSKKPKIKQQDIAAILYSSGTTGVSKGVVLTHRNFIAMVELFVRFEASKYEYLSEKNVYLAVLPMFHIYGLSHFVMGLLSLGSSIVVMRKFDIKEVVKAIDRYNVTHFPVVPPILTTLVKSAKKIGGHSFHSLKQVSCGAAPLSRNIIEDFVQAYPHVDFIQGYGMTESTAVATRGFNTEDTQNYSSVGLLAPSMEAKVVDWINGSFLPPGRCGELLLRGPALMKGYLNNTEATTSTIDHEAWLHTGDIVYFDREGYLYVIDRLKEMIKYKGFQIAPADLEAVLITHPDVLEVAVAGVVDEECGEIPVAFVVKKPGSSLSQIDVMDFVAKQVAPYKKIRRVVFKEAIPKSAAGKILRRELKKQLTSKL 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1325541 1328986 + evm.model.ptg000001l.231 HCH5g0231 544383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0231 572 FunFam 4-coumarate--CoA ligase 2 470 571 - -
HCH5g0231 572 CDD 4CL 49 564 - -
HCH5g0231 572 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 33 565 - GO:0005777(PANTHER)|GO:0006744(PANTHER)|GO:0016405(PANTHER)
HCH5g0231 572 Gene3D - 39 469 IPR042099 -
HCH5g0231 572 SUPERFAMILY Acetyl-CoA synthetase-like 71 569 - -
HCH5g0231 572 FunFam Long-chain-fatty-acid--CoA ligase FadD 42 469 - -
HCH5g0231 572 ProSitePatterns Putative AMP-binding domain signature. 219 230 IPR020845 -
HCH5g0231 572 Pfam AMP-binding enzyme C-terminal domain 484 558 IPR025110 -
HCH5g0231 572 Pfam AMP-binding enzyme 67 432 IPR000873 -
HCH5g0231 572 Gene3D - 470 571 IPR045851 -
HCH5g0231 572 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0231 HCH-Chr5:1325541 HCH8g1024 HCH-Chr8:46243694 2.00E-88 dispersed
HCH5g0231 HCH-Chr5:1325541 HCH12g0078 HCH-Chr12:402955 2.40E-129 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0231 K01904 - csv:101219578 758.059