Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0239 ATGGGTGGCAGTGAGATGAATAAACCAGCAGAGGAGTCCAAGATAACGCCTTCCACTACGCAGGAACAGTCTTCAAACACAAGCACTGGCATCGTCAATCCTGAATGGTCAGGATTTCAGGCATATTCTCCGATACCTCCACCTGGATATTTGGCAACAAATCCCCAAGCACACCCATATATGTGGGGGGTACAGCATATTATGCCTCCTTATGGAACCCCTCCACACCCATATGTTGCAATGTATCCTCATGGTGGTATATATGCTCATTCGCCCATTCCTCCGGGATCGTATCCTTTCAGCCCTTTTGCTATAGCTTCTTCAAACGGCATTGCTGAGGCCTCTGGGAATACACAAGGAAGCATGGAGGGGAATGGTAAACCATCTGAGCTGAAGGAAAAATTGCCAATTAAAAGATCAAAAGGAAGCCTGGGAAGTTTAAACATGATAACTGGGAAGAACAATGAGCTTGGTAAACCATCAGGAACATCTGCTAATGGAGTTCATTCTAAAAGTGATGAAAGTGGAAGTGAAGGTACAAGCGAAAGAAGTGACACTGATTCTCAAAATGATTCACAACTAAAATCTGGTTCTGGGAAAGATTCTTTAGAAGGTGAAGTGACTCATAATGGCTTGGTGCATGGTTCTCAGAATGAAGGACTTGGTACCCCTCATTCATTGGTAAATCAAACAATGTCCGTCATGCCGATTCAAGCTTCTGGTACTCCTGGACCTGTTACAGGTCCCGCTACAAATTTAAATATAGGAATGGACTACTGGGGTGCTCCAACAACTTCCACAATCCCTTCATTGTGTGGAAAGGTCCCTTCAACTCCTGTCGGAGGAGCTGTTGCTGCTGGGCCACGGGACAGTGTTCAATCACAGCGTTGGTTACAGCCACAGGATGAAAGAGAGATAAAAAGACAGAGAAGGAAGCAGTCAAACAGAGAATCTGCTCGTAGATCTCGGTTGCGTAAGCAGGCTGAATGTGATGAGCTGTCTCAGCGTGCGGATGTTCTAAAGGAAGAAAATGACAGTCTTAGATCTGAAGTGAATAGGATTAGGAGTGAGTATGAGCAACTTCTTTCAGAGAATGCCTCTCTCAAGGAGAGACTTGGAGAATGTCCTGGAAATGAAGAGCCAAGATCTGCCAAGGATGGAAAAAAATTGAATAAAGAAGCTCAACTTGCAAAAGGGTAA 1200 44.67 MGGSEMNKPAEESKITPSTTQEQSSNTSTGIVNPEWSGFQAYSPIPPPGYLATNPQAHPYMWGVQHIMPPYGTPPHPYVAMYPHGGIYAHSPIPPGSYPFSPFAIASSNGIAEASGNTQGSMEGNGKPSELKEKLPIKRSKGSLGSLNMITGKNNELGKPSGTSANGVHSKSDESGSEGTSERSDTDSQNDSQLKSGSGKDSLEGEVTHNGLVHGSQNEGLGTPHSLVNQTMSVMPIQASGTPGPVTGPATNLNIGMDYWGAPTTSTIPSLCGKVPSTPVGGAVAAGPRDSVQSQRWLQPQDEREIKRQRRKQSNRESARRSRLRKQAECDELSQRADVLKEENDSLRSEVNRIRSEYEQLLSENASLKERLGECPGNEEPRSAKDGKKLNKEAQLAKG 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1375513 1380001 + evm.model.ptg000001l.239 HCH5g0239 544391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0239 399 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 305 368 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0239 399 MobiDBLite consensus disorder prediction 373 399 - -
HCH5g0239 399 Pfam G-box binding protein MFMR 1 94 IPR012900 -
HCH5g0239 399 CDD bZIP_plant_GBF1 308 358 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0239 399 Pfam bZIP transcription factor 303 365 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0239 399 MobiDBLite consensus disorder prediction 1 38 - -
HCH5g0239 399 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 310 325 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0239 399 SMART brlzneu 303 367 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0239 399 SUPERFAMILY Leucine zipper domain 306 362 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH5g0239 399 PANTHER G-BOX-BINDING FACTOR 3-RELATED 22 384 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0043565(InterPro)|GO:0043565(PANTHER)
HCH5g0239 399 MobiDBLite consensus disorder prediction 11 36 - -
HCH5g0239 399 Pfam Disordered region downstream of MFMR 133 269 - -
HCH5g0239 399 MobiDBLite consensus disorder prediction 112 226 - -
HCH5g0239 399 Coils Coil 316 371 - -
HCH5g0239 399 MobiDBLite consensus disorder prediction 175 189 - -
HCH5g0239 399 MobiDBLite consensus disorder prediction 368 399 - -
HCH5g0239 399 MobiDBLite consensus disorder prediction 211 226 - -
HCH5g0239 399 MobiDBLite consensus disorder prediction 279 333 - -
HCH5g0239 399 Gene3D - 306 360 - -
HCH5g0239 399 MobiDBLite consensus disorder prediction 144 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0239 HCH-Chr5:1375513 HCH7g1676 HCH-Chr7:48729875 7.90E-15 dispersed
HCH5g0239 HCH-Chr5:1375513 HCH6g1143 HCH-Chr6:45998276 5.50E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33573 PF16596 MFMR_assoc 3.10E-51 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0239 K09060 - csv:101214217 649.047