Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0246 ATGGAGCTGTTTCCAGCACAGCCAGATTTAAATTTGCAAATCAGTCCTCCAAACAGCAATAAACCAACTTCAAGTTGGAGGAGAAGAAGTGCTCAAGAAGAAGTTGATTTGGGGTTTTGGAATATTGCTTTGGATTCCACAACTTCTTCTTCTTCAACTTCATCAGCACCCAAACAACAACCAGATCATTCATGTTTTGATCTCTCTCTCTCTAACTTCACCCAAATTAATCACCACTTTCATTCTAATGCTAATACTAGTAATCTTTTCCAAACCCTACACAAAAACCAACACCTGCAGCCACTGCAGCACCACCACCATCACCGGCAGGCGACGGTTTATCGACATAATCAGTCGCTTTTCGAGCTCCAGAACCAACACCAACACCACCAGCATCAGTTTCAACGGCAAAATCTTCAACAAGATTTTGCATTCTTAAGACCTATTAGAGGAATTCCAGTATATCATCAAAGTCCAGTTGCTCCTAGTCCTAATTCCTCTTTTCAATCTTCTCAAGCGCAGTTTATGCGATCGAGATTCTTGTCGCGGTTTCCGGCCAAACGAAGCATGAGAGCGCCTAGAATGAGATGGACTTCTACTCTTCATGCTCGCTTTGTTCATGCTGTAGAACTCTTGGGTGGGCATGAAAGAGCTACACCAAAATCAGTACTCGAGCTTATGGATGTTAAAGACCTCACCTTGGCCCATGTCAAATCTCATTTACAGATGTATCGGACGGTGAAGACCACAGATAGAGCAGCAGCTTCTTCAGGCCAATCAGATTTGTATGAGAATGCATCATCTGGTGATAATAGTAATATTGAAGATATAATATTTGACATTCAGAAGCCATCAAGGGGAAAGCAAAATGAGCTCAGCTCAGTTCAACAAAGCAGGCAAAACCTTCATCAAGATAAGGATTTTCATGCCCTTTGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGTTTACCAAATGATTCTTCTAGGGACCTTTCTTCATCCCTTGAGAATGATATGGATCCAAAGAGCTCAAACAATGAGAGACTATCGGAAATAAGCTCTTCGGGAAATCTTTCGGCAGCTGGGATGAATCCACAGAAGCCTAATCTGGAATTCACATTAGGAAGGGCAATTTCATGA 1143 42.17 MELFPAQPDLNLQISPPNSNKPTSSWRRRSAQEEVDLGFWNIALDSTTSSSSTSSAPKQQPDHSCFDLSLSNFTQINHHFHSNANTSNLFQTLHKNQHLQPLQHHHHHRQATVYRHNQSLFELQNQHQHHQHQFQRQNLQQDFAFLRPIRGIPVYHQSPVAPSPNSSFQSSQAQFMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDNSNIEDIIFDIQKPSRGKQNELSSVQQSRQNLHQDKDFHALWSNSSREAWLHGLPNDSSRDLSSSLENDMDPKSSNNERLSEISSSGNLSAAGMNPQKPNLEFTLGRAIS 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1429104 1433019 - evm.model.ptg000001l.246 HCH5g0246 544398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0246 380 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 378 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
HCH5g0246 380 MobiDBLite consensus disorder prediction 11 26 - -
HCH5g0246 380 MobiDBLite consensus disorder prediction 347 367 - -
HCH5g0246 380 SUPERFAMILY Homeodomain-like 190 246 IPR009057 -
HCH5g0246 380 Gene3D - 192 249 - -
HCH5g0246 380 Pfam Myb-like DNA-binding domain 194 245 IPR001005 -
HCH5g0246 380 NCBIfam myb-like DNA-binding domain, SHAQKYF class 193 246 IPR006447 GO:0003677(InterPro)
HCH5g0246 380 FunFam Myb family transcription factor 191 249 - -
HCH5g0246 380 MobiDBLite consensus disorder prediction 328 380 - -
HCH5g0246 380 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0682 HCH-Chr4:4433593 HCH5g0246 HCH-Chr5:1429104 1.70E-30 dispersed
HCH5g0246 HCH-Chr5:1429104 HCH9g0445 HCH-Chr9:2853200 7.20E-42 dispersed
HCH9g0790 HCH-Chr9:5481201 HCH5g0246 HCH-Chr5:1429104 6.70E-19 transposed
HCH5g0246 HCH-Chr5:1429104 HCH6g1137 HCH-Chr6:45936702 1.30E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33574 None None None None HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0246 - - - 0.0