Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0246 ATGGAGCTGTTTCCAGCACAGCCAGATTTAAATTTGCAAATCAGTCCTCCAAACAGCAATAAACCAACTTCAAGTTGGAGGAGAAGAAGTGCTCAAGAAGAAGTTGATTTGGGGTTTTGGAATATTGCTTTGGATTCCACAACTTCTTCTTCTTCAACTTCATCAGCACCCAAACAACAACCAGATCATTCATGTTTTGATCTCTCTCTCTCTAACTTCACCCAAATTAATCACCACTTTCATTCTAATGCTAATACTAGTAATCTTTTCCAAACCCTACACAAAAACCAACACCTGCAGCCACTGCAGCACCACCACCATCACCGGCAGGCGACGGTTTATCGACATAATCAGTCGCTTTTCGAGCTCCAGAACCAACACCAACACCACCAGCATCAGTTTCAACGGCAAAATCTTCAACAAGATTTTGCATTCTTAAGACCTATTAGAGGAATTCCAGTATATCATCAAAGTCCAGTTGCTCCTAGTCCTAATTCCTCTTTTCAATCTTCTCAAGCGCAGTTTATGCGATCGAGATTCTTGTCGCGGTTTCCGGCCAAACGAAGCATGAGAGCGCCTAGAATGAGATGGACTTCTACTCTTCATGCTCGCTTTGTTCATGCTGTAGAACTCTTGGGTGGGCATGAAAGAGCTACACCAAAATCAGTACTCGAGCTTATGGATGTTAAAGACCTCACCTTGGCCCATGTCAAATCTCATTTACAGATGTATCGGACGGTGAAGACCACAGATAGAGCAGCAGCTTCTTCAGGCCAATCAGATTTGTATGAGAATGCATCATCTGGTGATAATAGTAATATTGAAGATATAATATTTGACATTCAGAAGCCATCAAGGGGAAAGCAAAATGAGCTCAGCTCAGTTCAACAAAGCAGGCAAAACCTTCATCAAGATAAGGATTTTCATGCCCTTTGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGTTTACCAAATGATTCTTCTAGGGACCTTTCTTCATCCCTTGAGAATGATATGGATCCAAAGAGCTCAAACAATGAGAGACTATCGGAAATAAGCTCTTCGGGAAATCTTTCGGCAGCTGGGATGAATCCACAGAAGCCTAATCTGGAATTCACATTAGGAAGGGCAATTTCATGA 1143 42.17 MELFPAQPDLNLQISPPNSNKPTSSWRRRSAQEEVDLGFWNIALDSTTSSSSTSSAPKQQPDHSCFDLSLSNFTQINHHFHSNANTSNLFQTLHKNQHLQPLQHHHHHRQATVYRHNQSLFELQNQHQHHQHQFQRQNLQQDFAFLRPIRGIPVYHQSPVAPSPNSSFQSSQAQFMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDNSNIEDIIFDIQKPSRGKQNELSSVQQSRQNLHQDKDFHALWSNSSREAWLHGLPNDSSRDLSSSLENDMDPKSSNNERLSEISSSGNLSAAGMNPQKPNLEFTLGRAIS 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1429104 1433019 - evm.model.ptg000001l.246 HCH5g0246 544398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0246 380 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 378 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
HCH5g0246 380 MobiDBLite consensus disorder prediction 11 26 - -
HCH5g0246 380 MobiDBLite consensus disorder prediction 347 367 - -
HCH5g0246 380 SUPERFAMILY Homeodomain-like 190 246 IPR009057 -
HCH5g0246 380 Gene3D - 192 249 - -
HCH5g0246 380 Pfam Myb-like DNA-binding domain 194 245 IPR001005 -
HCH5g0246 380 NCBIfam myb-like DNA-binding domain, SHAQKYF class 193 246 IPR006447 GO:0003677(InterPro)
HCH5g0246 380 FunFam Myb family transcription factor 191 249 - -
HCH5g0246 380 MobiDBLite consensus disorder prediction 328 380 - -
HCH5g0246 380 MobiDBLite consensus disorder prediction 1 30 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0246 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0682 HCH-Chr4:4433593 HCH5g0246 HCH-Chr5:1429104 1.70E-30 dispersed
HCH5g0246 HCH-Chr5:1429104 HCH9g0445 HCH-Chr9:2853200 7.20E-42 dispersed
HCH9g0790 HCH-Chr9:5481201 HCH5g0246 HCH-Chr5:1429104 6.70E-19 transposed
HCH5g0246 HCH-Chr5:1429104 HCH6g1137 HCH-Chr6:45936702 1.30E-80 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH5g0246 . 176 377 G2-like Transcription Factor Family AT5G16560 51.2 9.4e-40 161.4
HCH4g0682 . 1 183 G2-like Transcription Factor Family AT5G42630 59.5 8.3e-46 180.6
HCH12g0669 . 12 175 G2-like Transcription Factor Family AT5G42630 60.2 1.4e-40 163.3
HCH8g0792 . 3 339 G2-like Transcription Factor Family AT2G03500 50.4 6.0e-77 285.0
HCH1g0801 . 1 259 G2-like Transcription Factor Family AT1G25550 53.7 3.3e-52 202.2
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT1G25550 54.6 8.1e-51 197.6
HCH1g0801 . 19 269 G2-like Transcription Factor Family AT3G25790 50.2 2.6e-43 172.6
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT3G25790 51.3 6.0e-40 161.4
HCH3g1389 . 1 263 G2-like Transcription Factor Family AT3G46640 52.0 5.4e-54 208.4
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT5G05090 55.6 3.6e-72 268.5
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT5G05090 55.5 3.7e-69 258.5
HCH7g1427 . 13 309 G2-like Transcription Factor Family AT4G13640 53.3 4.6e-52 201.8
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH4g0893 . 6 230 G2-like Transcription Factor Family AT1G69580 55.9 2.0e-51 199.9
HCH7g0014 . 1 385 G2-like Transcription Factor Family AT1G79430 53.4 7.2e-84 307.8
HCH2g0956 . 1 363 G2-like Transcription Factor Family AT1G79430 56.3 4.7e-83 305.1
HCH7g1427 . 38 197 G2-like Transcription Factor Family AT1G79430 61.4 2.3e-37 153.3
HCH14g0730 . 54 292 G2-like Transcription Factor Family AT2G01060 60.9 2.1e-55 212.6
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT3G10760 61.3 2.2e-90 329.3
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT3G10760 61.3 1.6e-85 313.2
HCH9g0976 . 1 201 G2-like Transcription Factor Family AT2G40970 61.6 7.8e-61 230.7
HCH9g1278 . 1 201 G2-like Transcription Factor Family AT2G40970 58.3 4.3e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001608 1 1 2 1 2 2 4 2 2 2 2 2 4 3 2 5 2 2 4 2 2 2 2 2 2 2 2 6 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33574 None None None None HCH TF