Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0248 ATGTATGGGGATTGTCAAGTGATGTCAAGCAATATGGGAGGAAACATGGTTTCTTCTGAAACCCTCTTCTCTTCTCCCATCCAAAACCCTAACTTCAACTTCATACCTAATTTCCAACATTTTCCTTCTATCCTTCCTAAAGAAGAAAATGGGTTGATGAGAGGAAAAGAAGATATGGAAAGTGGTTCTGGAAGTGAACAATTGGTTGAAGAAAAATCGGGGACTGAGTTGGAAAGCACTGATCAACAAAACCAGAAGAAGAAACGCTATCATAGGCATACTGCTCGCCAGATCCAAGAAATGGAAGGTTTGTTTAAGGAATGTCCACACCCAGATGATAAGCAGAGGCTGAAACTAAGCCAAGAACTTGGCCTCAAACCTCGCCAAGTCAAGTTTTGGTTCCAAAACCGAAGAACCCAAATGAAGGCACAACAAGACAGATCTGACAATGTGATTCTTAGGGCAGAGAATGAAACCCTAAAGAATGAGAATTACAGGCTACAAAGTGCCCTAAGAAACATTATATGCCCTAGTTGTGGAGGACAAAGTATTTTGGGAGATCCTAGCTTGGATGAACAGCAACTTCGCCTTGAAAATGCTCGTCTTAGAGAACAGTTAGATCAAGTTTGCTCCTTGACTTCAAGATACACTGGTCGGCAAATTCAAGGAATGGCTTCCACAGCTCCTCCTCTAATGCCACCATCTTTGGATTTGGATATGAACATTTACTCTCGCCAATACACAGAGGCCATGGTTTCTTCCACTGAAATGATGCCTCTGCCGCCTATGCTTCCTACAGACACTGCTCACTTTCAAGAGAATGGTCTATTGATGGAAGAGGAAAAGGCGCTCGCGATGGAGCTCGCCGTGTCATCGATGACTGAGCTCTTGAAGATGTGCCAGTCAGCTGAACCGCTCTGGATCCGAGATAGTGAGATTGGAAAAGAAGTTCTCAACATGGAAGAGCATGCCGCCATGTTTCCATGGCCATTGAACCTGAAACAGCACTTGATGAATGAGTTTAGAACTGAAGCCACCCGTGACAGTGCTATGGTTATAATGAACAGCATCACTCTTGTTGATGCCTTTCTTGATGCTAATAAGTGGATAGAGTTATTTCCTTCCATTGTGGCTAGAGCAAAAACTGTGCAAGTCATTTCCTCTAGTGCTTCTGGTCATGCAAGTGGTTCCCTTCAGCTGATGTATGCTGAATTGCAGGTTCTTTCTCCCCTTCTTCCAACTAGAGAAGCACATTTCCTTCGATACTGCCAACAGAATGCCGAGGAGGGAACTTGGGCGATCGTCGATTTCCCCATCGATAGCTTTCACGACAACCTTCAGCCCTCATTTCCTAGATATAGGAGAAGGCCTTCTGGCTGCATTATCCAAGACATGCCCAATGGATACTCCAGGGTTACGTGGGTTGAACATGCGGAAATAGAGGAGAAGCCGATCCACCAAATATTTAGTCACTTTGTCTACAGTGGGATGGCGTTTGGTGCTCATCGCTGGCTTTCTATTTTACAGAGACAATGCGAGAGAATCGCCAGCCTCATGGCCAGAAATATTTCAGATCTTGGAGTGATACCTTCACCAGAGGCAAGACAGAATCTAATGAAACTAGCACAGAGAATGATAAGAACATTCTCGGTGAACATAAGCACATCAGGAGGTCAATCATGGACGGCTTTATCGGATTCTCCGGACGATACTGTCCGAATAACAACGAGGAAGATCATAGAGCCAGGCCAACCAAATGGTGTAATTCTCAGCGCTGTCTCCACCACTTGGCTTCCTTTCCCTCATTACCGTGTGTTTGATCTTCTTAGAGATGAACGCCGCCGATCTCAGATTGAGGTTCTTTCTAATGGGAATTCACTTCATGAGGTGGCTCATATTGCCAATGGCTCTCACCCTGGAAATTGCATTTCTCTTCTTCGTATCAATGTGGCCAGCAACTCCTCTCAACATGTTGAATTAATGCTTCAAGAGAGCTGCACGGATCAGTCCGGCAGCCTCGTCGTTTACGCTACGATCGATGTTGATTCAATTCAGTTAGCAATGAGCGGGGAAGACCCCTCCTGCATTCCACTCCTCCCTATAGGATTCTTCATCGTCCCTGTCGTCGGTCCCTCGGCCGACACCATCCCTGCCGACGGACACTCGGTGCAACCGCCTGAAGACCGTTCATCGATCGTCAACTCCGGCTGCCTTCTCACCGTCGGCCTTCAAGTCCTGGCCAGCACCATCCCATCAGCTAAACTCAACCTCTCAAGCGTAACCGCCATCAACAACCACCTTTGCAACACGGTGCACCAAATCAACACCTCTCTCGGTGGTGCAACTCGTCCCGATAACAACAGCTCCACCGTTTCTGCCGTCACCGCCGCAGCGGAGGCCAACAATGCAGCCCAACCCAAGCAAGAGCTTGATGGTGTGGGATGCAATAGATAA 2454 46.9 MYGDCQVMSSNMGGNMVSSETLFSSPIQNPNFNFIPNFQHFPSILPKEENGLMRGKEDMESGSGSEQLVEEKSGTELESTDQQNQKKKRYHRHTARQIQEMEGLFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENETLKNENYRLQSALRNIICPSCGGQSILGDPSLDEQQLRLENARLREQLDQVCSLTSRYTGRQIQGMASTAPPLMPPSLDLDMNIYSRQYTEAMVSSTEMMPLPPMLPTDTAHFQENGLLMEEEKALAMELAVSSMTELLKMCQSAEPLWIRDSEIGKEVLNMEEHAAMFPWPLNLKQHLMNEFRTEATRDSAMVIMNSITLVDAFLDANKWIELFPSIVARAKTVQVISSSASGHASGSLQLMYAELQVLSPLLPTREAHFLRYCQQNAEEGTWAIVDFPIDSFHDNLQPSFPRYRRRPSGCIIQDMPNGYSRVTWVEHAEIEEKPIHQIFSHFVYSGMAFGAHRWLSILQRQCERIASLMARNISDLGVIPSPEARQNLMKLAQRMIRTFSVNISTSGGQSWTALSDSPDDTVRITTRKIIEPGQPNGVILSAVSTTWLPFPHYRVFDLLRDERRRSQIEVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQHVELMLQESCTDQSGSLVVYATIDVDSIQLAMSGEDPSCIPLLPIGFFIVPVVGPSADTIPADGHSVQPPEDRSSIVNSGCLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTVHQINTSLGGATRPDNNSSTVSAVTAAAEANNAAQPKQELDGVGCNR 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1460797 1465987 - evm.model.ptg000001l.248 HCH5g0248 544400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0248 817 Gene3D - 72 155 - -
HCH5g0248 817 Gene3D - 331 509 IPR023393 -
HCH5g0248 817 Pfam START domain 288 514 IPR002913 GO:0008289(InterPro)
HCH5g0248 817 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH5g0248 817 Pfam Homeodomain 87 142 IPR001356 GO:0003677(InterPro)
HCH5g0248 817 SMART HOX_1 85 148 IPR001356 GO:0003677(InterPro)
HCH5g0248 817 SUPERFAMILY Bet v1-like 551 774 - -
HCH5g0248 817 FunFam Homeobox-leucine zipper protein HDG1 74 160 - -
HCH5g0248 817 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677(InterPro)
HCH5g0248 817 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 73 778 IPR042160 -
HCH5g0248 817 ProSiteProfiles START domain profile. 278 517 IPR002913 GO:0008289(InterPro)
HCH5g0248 817 Coils Coil 143 163 - -
HCH5g0248 817 SUPERFAMILY Homeodomain-like 77 145 IPR009057 -
HCH5g0248 817 CDD START_ArGLABRA2_like 282 513 - -
HCH5g0248 817 SMART START_1 287 514 IPR002913 GO:0008289(InterPro)
HCH5g0248 817 SUPERFAMILY Bet v1-like 279 516 - -
HCH5g0248 817 CDD homeodomain 87 145 IPR001356 GO:0003677(InterPro)
HCH5g0248 817 MobiDBLite consensus disorder prediction 54 95 - -
HCH5g0248 817 MobiDBLite consensus disorder prediction 54 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0248 HCH-Chr5:1460797 HCH7g0229 HCH-Chr7:1529625 5.30E-175 dispersed
HCH13g0750 HCH-Chr13:6633281 HCH5g0248 HCH-Chr5:1460797 6.30E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33576 PF01852 START 1.10E-43 CL0209 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0248 - - - 0.0