Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH5g0253 | ATGAGAAACCAAGGTTCAGTTTCAGGAAATGAAGTTGCCGATGATGATATCATGATGAAGAAGAAGAATATAGAAGAATATGAAGGAGAAGAAGAAGAAGTTGATAAGAAGAAGAAGAAGAATCAACAAAACAAAGTTCCTTTTTGGAAACTCTTTGCTTTTGCTGATGTTTACGATTACTTTCTCATGACTGTTGGGTCAATAGGAGCTTGCATCCATGGAGCTTCTGTTCCTGTTTTCTTCATTTTCTTTGGAAAACTCATTAATATCATTGGCATGGCTTATCTTTTCCCTAAACAAGCTGCTCCCAAAGTTGCCAAGTACTCTTTTGATTTTTTATATCTCAGTGTGGTCATACTATTTTCTTCATGGGCAGAGGTGGCTTGTTGGATGCATAGTGGAGAAAGGCAAGCAGCAAAAATGAGAATGGCTTATTTAAGGTCAATGTTGAATCAAGATATAAGCCTCTTTGATACTGAAGCTTCCACTGGTGAAGTCATTTCTGCCATCACCAGTGACATTGTTGTTGTCCAAGATGCCATTTCTGAGAAGGTAGGAAACTTCTTGCACTATATAAGCCGTTTTATATCAGGATTTATCATTGGATTTGTGAGGGTATGGCAAATCAGTCTTGTTACGTTGTCTATTGTTCCGTTAATCGCGCTCGCCGGGGGTCTCTATGCTTTTGTGACAATTGGTCTTATAGCCAAAGTTCGTAAATCTTATGTCAAGGCTGGTGAGATTGCTGAAGAGATTCTGGGAAATGTAAGGACAGTACAAGCATTTGCTGGGGAAGAAAGGGCAGTGAACTTATATAAAGGAGCTCTCACAAATACCTACAAGTATGGGAGAAAAGCAGGACTGGCTAAGGGCCTGGGATTGGGATCCATGCATTGTGTTCTTTTCTTATCATGGTCTTTGCTTGTTTGGTTCACTAGCATTATTGTTCACAAGAAAATTGCCAATGGTGGAGACTCCTTCACCACAATGCTTAATGTAGTCATTTCTGGCCTGTCACTAGGGCAGGCTGCACCAGACATTTCTGCATTTATTCGAGCCAAGGCAGCAGCATATCCTATTTTCGAGATGATAGAGAGAAATACAGTCAGCAAAACCAGTGCTAAAACTGGCCGTAAACTAGACAAGCTTGACGGTCACATTCAGTTCAAGGATGTTAATTTCAGCTACCCATCTCGTCCAGATGTGATTATATTCAATAAGCTATCTCTTGATATTCCTGCTGGCAAGATTGTAGCTCTTGTGGGGGGAAGTGGGTCAGGAAAGAGCACAGTCATATCTTTGATTGAAAGATTCTATGAACCGCTTTTCGGAGAGATTCTATTAGATGGTAATAACATCAAGGATCTGGACCTCAAGTGGCTTAGGCAGCAAATTGGTCTGGTTAATCAAGAGCCTGCTCTTTTTGCAACAAGCATAAGGGAGAACATTCTGTATGGAAAAGATGATGCTACCCTTGAGGACATCACACGTGCAGCAAAACTGTCTGAGGCTTTATCCTTTATAAACAACCTCCCTGAAAGATTTGAAACTCAGGTGGGTGAGAGAGGGGTCCAATTATCAGGTGGGCAAAAACAAAGAATTGCAATTTCACGTGCAATTGTTAAGAATCCATCAATCCTGCTGTTAGATGAAGCAACGAGTGCGCTAGATGCAGAATCTGAGAAGAGTGTTCAAGAAGCACTTGACCGTGTCATGGTTGGCCGAACGACTGTAGTTGTGGCTCATCGTTTATCTACCATAAGGAATGCAGATGTGATTGCTGTTGTTCAAGAGGGGAAGATAGTTGAAACTGGGAGCCATGATGAGCTAATTTTAAAGCCAAACAGTGTCTATGCATCACTTGTGCAGTTCCAGGAGGCAGGTTCTCTGCAACGTTATCCCTCTATCGGGCATCAGTTGGGTCGACCACCGAGCATAAAGTATTCACGGGAACTGTCTCGCACTACAACCAGCTTTGGTGCAAGTTTTCGCTCTGAAAAAGAATCCGTTGGCCGCATTGGAGCAGATGGAATGGAAATTGAGAAACCAAGGCATGTTTCAGCAAGAAGACTTTACTCCATGGTTGGACCAGATTGGATGTATGGAATTGTTGGTGTCATTGGAGCATTTGTTACTGGATCCCAGATGCCCCTTTTTGCTCTTGGGGTCTCTCAGGCTCTTGTTTCTTATTATATGGACTGGAATACAACACAGATTGAGATTAAGAAAATTTCTTTGCTTTTCTGTGGAGGTGCAATTTTGACTGTCATTTTTCATGCAGTTGAGCATCTCTGTTTTGGAATTATGGGAGAGCGACTCACTCTTCGAGTACGAGAAAAGATGTTTCATGCTATTCTGAGAAATGAGATAGGATGGTTTGATGATACAAACAACACGAGTTCTATGCTTTCCTCACGTCTAGAAAGTGATGCAACTTTGTTAAGAACTATAGTTGTCGATCGCTCTACTATTCTTCTACAGAACTTGGCTCTGGTTGTTGCATCATTCATCATTGCTTTCATATTGAATTGGAGGATCACTCTTGTTGTCTTGGCCACTTATCCATTGATCATTAGTGGCCACATCAGCGAGAAACTTTTTATGAAAGGTTATGGCGGTAACTTGAGCAAAGCCTACCTGAAAGCTAACATGCTGGCTGGTGAGGCAGTGAGCAACATTAGAACTGTTGCTGCATTTTGTTCTGAGGAAAAGGTCCTTGATCTATATGCTAACGAGCTAGTTGAGCCCTCCAAACGTTCATTTAATCGTGGACAGATTGCTGGGATATTCTATGGTGTCTCTCAGTTCTTCATCTTTTCATCTTATGGCCTGGCCCTGTGGTATGGTTCTGTTTTAATGGGAGAAGGGCTTGCTAGCTTCAAATCGGTTATGAAAGCATTCATGGTTTTGATAGTAACTGCACTGGCAATGGGTGAGACTTTGGCACTGGCTCCTGACCTTTTGAAAGGAAACCAAATGGTGGCATCGGTGTTCGAAGTGCTCGACCGCCAGACAGAGGTACGAGGAGATGTTGGTGAAGAGCTAAATATGGTGGAGGGCACAATTGAGCTGAGGAGTGTTGAATTCAGTTATCCCTCAAGACCAGATGTTGTGATTTTCAAAGATTTCGATCTTAAAGTGAAAGCAGGCAAGAGTATAGCCCTGGTCGGCCAAAGTGGTTCGGGGAAAAGCTCGGTTCTTTCTCTTATATTGCGATTTTATGATCCAATAGCAGGAAGAGTGATGATTGATGGAAAAGATATAAAAAAGCTCAAGATAAAGTCTCTGCGAAAGCACATTGGCCTTGTTCAACAGGAACCGGCTCTTTTCGCCATATCGATTTATGAGAACATTGTTTATGGGAAGGAAGGAGCTTCAGAAGCAGAAGTATTTGAAGCAGCTAAGCTTGCCAATGCACATAGCTTCATCAGTGCTCTTCCTGAAGGCTACTCAACCAAAGTTGGCGAAAGAGGGATCCAACTTTCGGGTGGCCAACGACAGAGAATCGCCATAGCCAGAGCAGTTCTAAAGAACCCTGAAATTTTACTACTTGATGAAGCCACCAGCGCTCTCGATGTCGAATCCGAACGCGTAGTTCAGCAAGCTTTGGACAGACTTATGAAGAACAGAACAACAGTGGTGGTTGCACACAGGCTTTCCACCATTAAAAACTGTGACCAAATCTCAGTGATTCAAAATGGTAAGATAGTAGAACAAGGGACTCATTCAAGTCTCATTGAGAACAAGAATGGAGCATATTACAAGTTAATCAACATCCAGCAACAGCAACAAATACAATGA | 3801 | 42.23 | MRNQGSVSGNEVADDDIMMKKKNIEEYEGEEEEVDKKKKKNQQNKVPFWKLFAFADVYDYFLMTVGSIGACIHGASVPVFFIFFGKLINIIGMAYLFPKQAAPKVAKYSFDFLYLSVVILFSSWAEVACWMHSGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIVVVQDAISEKVGNFLHYISRFISGFIIGFVRVWQISLVTLSIVPLIALAGGLYAFVTIGLIAKVRKSYVKAGEIAEEILGNVRTVQAFAGEERAVNLYKGALTNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWFTSIIVHKKIANGGDSFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFEMIERNTVSKTSAKTGRKLDKLDGHIQFKDVNFSYPSRPDVIIFNKLSLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLFGEILLDGNNIKDLDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEDITRAAKLSEALSFINNLPERFETQVGERGVQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQEGKIVETGSHDELILKPNSVYASLVQFQEAGSLQRYPSIGHQLGRPPSIKYSRELSRTTTSFGASFRSEKESVGRIGADGMEIEKPRHVSARRLYSMVGPDWMYGIVGVIGAFVTGSQMPLFALGVSQALVSYYMDWNTTQIEIKKISLLFCGGAILTVIFHAVEHLCFGIMGERLTLRVREKMFHAILRNEIGWFDDTNNTSSMLSSRLESDATLLRTIVVDRSTILLQNLALVVASFIIAFILNWRITLVVLATYPLIISGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVLDLYANELVEPSKRSFNRGQIAGIFYGVSQFFIFSSYGLALWYGSVLMGEGLASFKSVMKAFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVLDRQTEVRGDVGEELNMVEGTIELRSVEFSYPSRPDVVIFKDFDLKVKAGKSIALVGQSGSGKSSVLSLILRFYDPIAGRVMIDGKDIKKLKIKSLRKHIGLVQQEPALFAISIYENIVYGKEGASEAEVFEAAKLANAHSFISALPEGYSTKVGERGIQLSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMKNRTTVVVAHRLSTIKNCDQISVIQNGKIVEQGTHSSLIENKNGAYYKLINIQQQQQIQ | 1266 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 1495504 | 1503732 | + | evm.model.ptg000001l.253 | HCH5g0253 | 544405 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH5g0253 | 1266 | CDD | ABC_MTABC3_MDL1_MDL2 | 1022 | 1257 | - | - | |
| HCH5g0253 | 1266 | Gene3D | ABC transporter type 1, transmembrane domain | 112 | 920 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| HCH5g0253 | 1266 | ProSitePatterns | ABC transporters family signature. | 526 | 540 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| HCH5g0253 | 1266 | CDD | ABC_MTABC3_MDL1_MDL2 | 387 | 625 | - | - | |
| HCH5g0253 | 1266 | ProSitePatterns | ABC transporters family signature. | 1161 | 1175 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| HCH5g0253 | 1266 | Gene3D | - | 1012 | 1261 | IPR027417 | - | |
| HCH5g0253 | 1266 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 692 | 1007 | - | - | |
| HCH5g0253 | 1266 | FunFam | ABC transporter B family member 4 | 1012 | 1264 | - | - | |
| HCH5g0253 | 1266 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 63 | 360 | - | - | |
| HCH5g0253 | 1266 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1022 | 1258 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| HCH5g0253 | 1266 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 65 | 352 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| HCH5g0253 | 1266 | Coils | Coil | 10 | 44 | - | - | |
| HCH5g0253 | 1266 | Pfam | ABC transporter | 406 | 554 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| HCH5g0253 | 1266 | FunFam | ABC transporter B family member 1 | 377 | 626 | - | - | |
| HCH5g0253 | 1266 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 380 | 625 | IPR027417 | - | |
| HCH5g0253 | 1266 | PANTHER | ABC TRANSPORTER B FAMILY | 16 | 649 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| HCH5g0253 | 1266 | Gene3D | - | 385 | 651 | IPR027417 | - | |
| HCH5g0253 | 1266 | Pfam | ABC transporter | 1041 | 1189 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| HCH5g0253 | 1266 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1016 | 1260 | IPR027417 | - | |
| HCH5g0253 | 1266 | Gene3D | ABC transporter type 1, transmembrane domain | 936 | 1263 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| HCH5g0253 | 1266 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| HCH5g0253 | 1266 | Pfam | ABC transporter transmembrane region | 68 | 335 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| HCH5g0253 | 1266 | Pfam | ABC transporter transmembrane region | 703 | 974 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| HCH5g0253 | 1266 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 387 | 623 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| HCH5g0253 | 1266 | SUPERFAMILY | ABC transporter transmembrane region | 51 | 357 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| HCH5g0253 | 1266 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 703 | 989 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| HCH5g0253 | 1266 | SUPERFAMILY | ABC transporter transmembrane region | 683 | 1003 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| HCH5g0253 | 1266 | SMART | AAA_5 | 414 | 606 | IPR003593 | GO:0016887(InterPro) | |
| HCH5g0253 | 1266 | SMART | AAA_5 | 1049 | 1221 | IPR003593 | GO:0016887(InterPro) | |
| HCH5g0253 | 1266 | Gene3D | ABC transporter type 1, transmembrane domain | 11 | 100 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH11g0296 | HCH-Chr11:2688423 | HCH5g0253 | HCH-Chr5:1495504 | 0.00E+00 | dispersed | |
| HCH12g0109 | HCH-Chr12:582523 | HCH5g0253 | HCH-Chr5:1495504 | 0.00E+00 | dispersed | |
| HCH2g0332 | HCH-Chr2:43703631 | HCH5g0253 | HCH-Chr5:1495504 | 9.70E-248 | dispersed | |
| HCH3g0126 | HCH-Chr3:798942 | HCH5g0253 | HCH-Chr5:1495504 | 1.80E-90 | dispersed | |
| HCH4g1534 | HCH-Chr4:11813624 | HCH5g0253 | HCH-Chr5:1495504 | 9.00E-258 | dispersed | |
| HCH5g0253 | HCH-Chr5:1495504 | HCH8g0705 | HCH-Chr8:43767619 | 1.60E-263 | dispersed | |
| HCH13g0448 | HCH-Chr13:3106705 | HCH5g0253 | HCH-Chr5:1495504 | 7.20E-273 | transposed | |
| HCH1g1069 | HCH-Chr1:58461765 | HCH5g0253 | HCH-Chr5:1495504 | 1.80E-62 | transposed | |
| HCH1g1123 | HCH-Chr1:58782909 | HCH5g0253 | HCH-Chr5:1495504 | 3.30E-50 | transposed | |
| HCH2g0967 | HCH-Chr2:53007638 | HCH5g0253 | HCH-Chr5:1495504 | 1.10E-60 | transposed | |
| HCH4g1016 | HCH-Chr4:6537641 | HCH5g0253 | HCH-Chr5:1495504 | 3.40E-50 | transposed | |
| HCH4g1173 | HCH-Chr4:7874569 | HCH5g0253 | HCH-Chr5:1495504 | 8.80E-269 | transposed | |
| HCH4g1174 | HCH-Chr4:7878936 | HCH5g0253 | HCH-Chr5:1495504 | 6.50E-06 | transposed | |
| HCH8g1083 | HCH-Chr8:46673056 | HCH5g0253 | HCH-Chr5:1495504 | 5.50E-31 | transposed | |
| HCH13g0745 | HCH-Chr13:6458438 | HCH5g0253 | HCH-Chr5:1495504 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH5g0253 | K05658 | - | csv:101219304 | 2168.66 |