Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0263 ATGAGTTTAGATGCTCTTTCCTCCACTGAGCTATTGAACTTCATCATCTATGACACAATCTCTGCAACTCCTAGCAGTTGCCAAGACTCATCAGATACTGCTTTCTTAGTGGAGAAGTACTTGAAACATCAAGATCATCAGCAGCAGCAACTGTTTGATGGGACCGAACCGAGTTCGGCCGTGTCGAGAAAGCGGCGGTCCGGTATGCCTGAGAGTTGTTTCAATGGCAGCTCAAGGAAGAGCTTGGAAATGACAGCAACATCACAGCAAGGAATTAAGAAGAAGAGGAAGAGAAAGGCAAAGGTTTGTAAGAATATAGAGGAAGCTGAAACACAGAGAATGACACATATTGCTGTTGAAAGGAATCGCAGGAAACAGATGAATGAGCATCTTTCAGTGTTGCGTTCCCTCATGCCTGAATCCTATGTTCAAAGGGGTGATCAAGCTTCCATAGTAGGTGGTGCAGTTGAGTTTGTGAAGGAACTTGAGCATCTGTTATCAACCCTTGAAGCAAAGAGGCTGAAAGTTGTCCAAGAAGAGAACAATGAAGATTCCTCAGTCATCAGCACCAATTTGTATTCTCCACTATTTGCACAATTTTTCATGCATCCTCAGTACAACTGGTCTCAATTCTCCAACAAATTTACCTCAAAATCAAAGGCTTCTACATCTGACATCGAGGTCACTTTGATTGAAACTCATGCAAACCTTAGAATCCTCTCAAGAAGAAGTCATAGACAGCTCCTCAAGCTGATTTCTGGATTTCAGACAGTTCATCTCACCATTCTTCACCTTAATGTCACCAACATTGACCCTTTGGTTCTTTACTCCATTAGTGCCAAGGTTGAAGAAGGATGCCAACTGAGGTCAGTAGATGACATAGCAGCAGCAATCCACCATATGATTAGAATAATTGAAGAAGAAGCCCTCCTATGTTAA 939 42.39 MSLDALSSTELLNFIIYDTISATPSSCQDSSDTAFLVEKYLKHQDHQQQQLFDGTEPSSAVSRKRRSGMPESCFNGSSRKSLEMTATSQQGIKKKRKRKAKVCKNIEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKRLKVVQEENNEDSSVISTNLYSPLFAQFFMHPQYNWSQFSNKFTSKSKASTSDIEVTLIETHANLRILSRRSHRQLLKLISGFQTVHLTILHLNVTNIDPLVLYSISAKVEEGCQLRSVDDIAAAIHHMIRIIEEEALLC 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1544480 1547057 + evm.model.ptg000001l.263 HCH5g0263 544415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0263 312 Gene3D - 102 190 IPR036638 GO:0046983(InterPro)
HCH5g0263 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 111 162 IPR011598 GO:0046983(InterPro)
HCH5g0263 312 Coils Coil 159 182 - -
HCH5g0263 312 Pfam Helix-loop-helix DNA-binding domain 112 163 IPR011598 GO:0046983(InterPro)
HCH5g0263 312 MobiDBLite consensus disorder prediction 46 94 - -
HCH5g0263 312 Coils Coil 92 112 - -
HCH5g0263 312 PANTHER MAX DIMERIZATION, MAD 58 303 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH5g0263 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 110 173 IPR036638 GO:0046983(InterPro)
HCH5g0263 312 MobiDBLite consensus disorder prediction 71 89 - -
HCH5g0263 312 SMART finulus 117 168 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0263 HCH-Chr5:1544480 HCH8g0136 HCH-Chr8:5460207 1.90E-48 dispersed
HCH5g0263 HCH-Chr5:1544480 HCH4g0243 HCH-Chr4:1468335 4.70E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33579 PF00010 HLH 1.10E-10 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0263 - - - 0.0