Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH5g0263 | ATGAGTTTAGATGCTCTTTCCTCCACTGAGCTATTGAACTTCATCATCTATGACACAATCTCTGCAACTCCTAGCAGTTGCCAAGACTCATCAGATACTGCTTTCTTAGTGGAGAAGTACTTGAAACATCAAGATCATCAGCAGCAGCAACTGTTTGATGGGACCGAACCGAGTTCGGCCGTGTCGAGAAAGCGGCGGTCCGGTATGCCTGAGAGTTGTTTCAATGGCAGCTCAAGGAAGAGCTTGGAAATGACAGCAACATCACAGCAAGGAATTAAGAAGAAGAGGAAGAGAAAGGCAAAGGTTTGTAAGAATATAGAGGAAGCTGAAACACAGAGAATGACACATATTGCTGTTGAAAGGAATCGCAGGAAACAGATGAATGAGCATCTTTCAGTGTTGCGTTCCCTCATGCCTGAATCCTATGTTCAAAGGGGTGATCAAGCTTCCATAGTAGGTGGTGCAGTTGAGTTTGTGAAGGAACTTGAGCATCTGTTATCAACCCTTGAAGCAAAGAGGCTGAAAGTTGTCCAAGAAGAGAACAATGAAGATTCCTCAGTCATCAGCACCAATTTGTATTCTCCACTATTTGCACAATTTTTCATGCATCCTCAGTACAACTGGTCTCAATTCTCCAACAAATTTACCTCAAAATCAAAGGCTTCTACATCTGACATCGAGGTCACTTTGATTGAAACTCATGCAAACCTTAGAATCCTCTCAAGAAGAAGTCATAGACAGCTCCTCAAGCTGATTTCTGGATTTCAGACAGTTCATCTCACCATTCTTCACCTTAATGTCACCAACATTGACCCTTTGGTTCTTTACTCCATTAGTGCCAAGGTTGAAGAAGGATGCCAACTGAGGTCAGTAGATGACATAGCAGCAGCAATCCACCATATGATTAGAATAATTGAAGAAGAAGCCCTCCTATGTTAA | 939 | 42.39 | MSLDALSSTELLNFIIYDTISATPSSCQDSSDTAFLVEKYLKHQDHQQQQLFDGTEPSSAVSRKRRSGMPESCFNGSSRKSLEMTATSQQGIKKKRKRKAKVCKNIEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKRLKVVQEENNEDSSVISTNLYSPLFAQFFMHPQYNWSQFSNKFTSKSKASTSDIEVTLIETHANLRILSRRSHRQLLKLISGFQTVHLTILHLNVTNIDPLVLYSISAKVEEGCQLRSVDDIAAAIHHMIRIIEEEALLC | 312 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1544480 | 1547057 | + | evm.model.ptg000001l.263 | HCH5g0263 | 544415 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH5g0263 | 312 | Gene3D | - | 102 | 190 | IPR036638 | GO:0046983(InterPro) | |
HCH5g0263 | 312 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 111 | 162 | IPR011598 | GO:0046983(InterPro) | |
HCH5g0263 | 312 | Coils | Coil | 159 | 182 | - | - | |
HCH5g0263 | 312 | Pfam | Helix-loop-helix DNA-binding domain | 112 | 163 | IPR011598 | GO:0046983(InterPro) | |
HCH5g0263 | 312 | MobiDBLite | consensus disorder prediction | 46 | 94 | - | - | |
HCH5g0263 | 312 | Coils | Coil | 92 | 112 | - | - | |
HCH5g0263 | 312 | PANTHER | MAX DIMERIZATION, MAD | 58 | 303 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
HCH5g0263 | 312 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 110 | 173 | IPR036638 | GO:0046983(InterPro) | |
HCH5g0263 | 312 | MobiDBLite | consensus disorder prediction | 71 | 89 | - | - | |
HCH5g0263 | 312 | SMART | finulus | 117 | 168 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH5g0263 | HCH-Chr5:1544480 | HCH8g0136 | HCH-Chr8:5460207 | 1.90E-48 | dispersed | |
HCH5g0263 | HCH-Chr5:1544480 | HCH4g0243 | HCH-Chr4:1468335 | 4.70E-55 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33579 | PF00010 | HLH | 1.10E-10 | No_clan | HCH | TF |
Pathway information
