Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH5g0270 | ATGACAGACTATCGATTACCGCCGACGATGAATCTCTGGACAGAAGAAAACGCCTCAATGATGGACGCTTTCATGACCACCGATCTAAGTTCCTTCTGGCTCACTCCTCCTCCTCCGCCTCCTCCGCCGCCCTCGCAACAACCTACACCACCTCCGCCTCAATCTCAACCACCGTCCACGGCGGTTTTAAATCAAGAAACTCTTCAACAACGTCTCCAATCCTTAATCGAAAACGCCGATGAAGCTTGGACCTACGCTATCTTCTGGCAATCGTCTTTCGATTACTCTGGCGCCTCCGTATTAGGGTGGGGAGACGGTTATTACAAAGGGGAAGAAGATAAGGCGAAGACGAAAAGCGGTAGCTCAATTGCGGAGCAAGAGCACCGTAAGAAGGTGCTCCGTGAGCTTAATTCTTTGATTTCTGGTTCTCCGTCAACGGAAGATGACGCCGTCGATGAAATCGTTACCGATACCGAGTGGTTTTTTTTGGTTTCGATGACTCAGTCTTTTAATTCCGGTGTCGGATTGCCGGGACTGGCCTTTTTGAATTCGGATCGTGTTTGGGTTTCCGGGTCAGATCGGCTGGAGAATTCGGGTTGTGAGAGGGCTAGGCAAGCTCAGGTTTTCGGGTTGCAGACGATGGTTTGTATACCGTCGGAGAATGGGGTGGTGGAATTGGGATCCACGGAGGTTATTTATCAGAGTTTGGATCTCATGAATAAGGTTAGGGTTTTGTTTAATTTTGATAATAATAGTAATAATAATAATGTGGAAATGGGAAATTGGCCTATTAGTGGTGTTGATGAAGGAGAGAATGACCCTGAGCCTGACCCTTCTTCACTTTGGATTAGTGATCCGTCGAATGATATCGAAATTAAGGATTCTGTTAATAATAGTAATACTGTTGTGTTGCCTCCGGCTTCGGTTCCGAGTCCTACGACTAGTCAGCCGGTTTCGAAATCCATACGGACGGAGAATGTGAAATCCAGTGTTGTGAATGAAACTCCGAGCTCTGTTCCATCGCAGAAGAGCCAGCAGAGTCACTTGCAGTCGAGGCCTACTCATGCTCAGAGTTTTTTTACCAAGGAGTTGAATTTTTCGGAATTTGGGTTTGAGAATAGCGGCTTGAAGGATGGGAATTCGCTTTCGCTTAAGCCGGAGTCAGGTGAGATTCTGAGTTTTGGGGAAAGTAAGAGGAGTTCTTATGGGAATACGAATAATAACTTGCTTTCGGGGAATTCGCAGTTTGTGGTGGATGTTGAGAATAAGAAGAAAAAGTCGCCTAATTCACGTGGTAGTAATGAGGAGGGGATGCTTTCGTTTACATCGGGTGTGATATTACCGTCTTCTGGGGTTGTGAAATCGGGTGGTTGCGTTGGTGATTCCGATCACTCGGACCTTGAAGCTTCGGTGGTTCGTGAGGTGGAGAGTAGTAGAGTGGCGGAGCCGGAGAAGCGGCCTCGTAAAAGAGGTCGGAAGCCAGCGAATGGTAGGGAGGAACCGTTGAATCATGTTGAAGCAGAGAGGCAGCGGAGAGAGAAGCTAAATCAGAGGTTTTATGCTCTTCGAGCTGTGGTTCCAAATGTATCGAAGATGGACAAAGCTTCACTCCTTGGTGATGCAATTTCTTACATTAATGAGCTCAAAGGGAAGCTTCAAGTTACAGAATCAGATAAGGAGGATTTGCAAAAGCAATTGGATTCAGTGAAGAACTTGACGTCTAGTAAAGATTCATGCATTTCAAGCTCAAATCAACCTCCACCAGATCAAGACACGAAAACATCAAATATCCATGCGAGTATAGAAATGGATATCGATGTGAAGATAATCGGTTGGGATGCTATGATTCGAATCCAGTCTAGTAAGAAAAACCATCCTGCTGCAAGGCTAATGGCTGCTTTAGAGGAAATGGACTTGGATATCAACCATGCGAGCATGTCAGTTGTCAACGATCTGATGATACAACAAGCTACTGTCAAGATGGGGAGTCGGTTTTACACTCAGGAGCAGCTAAGGATAGCTCTATCGTCCAAAGTAGGTGGTATCCGATAG | 2052 | 46.1 | MTDYRLPPTMNLWTEENASMMDAFMTTDLSSFWLTPPPPPPPPPSQQPTPPPPQSQPPSTAVLNQETLQQRLQSLIENADEAWTYAIFWQSSFDYSGASVLGWGDGYYKGEEDKAKTKSGSSIAEQEHRKKVLRELNSLISGSPSTEDDAVDEIVTDTEWFFLVSMTQSFNSGVGLPGLAFLNSDRVWVSGSDRLENSGCERARQAQVFGLQTMVCIPSENGVVELGSTEVIYQSLDLMNKVRVLFNFDNNSNNNNVEMGNWPISGVDEGENDPEPDPSSLWISDPSNDIEIKDSVNNSNTVVLPPASVPSPTTSQPVSKSIRTENVKSSVVNETPSSVPSQKSQQSHLQSRPTHAQSFFTKELNFSEFGFENSGLKDGNSLSLKPESGEILSFGESKRSSYGNTNNNLLSGNSQFVVDVENKKKKSPNSRGSNEEGMLSFTSGVILPSSGVVKSGGCVGDSDHSDLEASVVREVESSRVAEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKGKLQVTESDKEDLQKQLDSVKNLTSSKDSCISSSNQPPPDQDTKTSNIHASIEMDIDVKIIGWDAMIRIQSSKKNHPAARLMAALEEMDLDINHASMSVVNDLMIQQATVKMGSRFYTQEQLRIALSSKVGGIR | 683 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1595608 | 1597659 | + | evm.model.ptg000001l.270 | HCH5g0270 | 544422 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH5g0270 | 683 | MobiDBLite | consensus disorder prediction | 573 | 596 | - | - | |
HCH5g0270 | 683 | Coils | Coil | 545 | 572 | - | - | |
HCH5g0270 | 683 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 499 | 548 | IPR011598 | GO:0046983(InterPro) | |
HCH5g0270 | 683 | MobiDBLite | consensus disorder prediction | 33 | 58 | - | - | |
HCH5g0270 | 683 | CDD | bHLH_AtAIB_like | 496 | 570 | - | - | |
HCH5g0270 | 683 | MobiDBLite | consensus disorder prediction | 466 | 509 | - | - | |
HCH5g0270 | 683 | MobiDBLite | consensus disorder prediction | 301 | 355 | - | - | |
HCH5g0270 | 683 | FunFam | Transcription factor bHLH13 | 492 | 566 | - | - | |
HCH5g0270 | 683 | Gene3D | - | 498 | 574 | IPR036638 | GO:0046983(InterPro) | |
HCH5g0270 | 683 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 502 | 569 | IPR036638 | GO:0046983(InterPro) | |
HCH5g0270 | 683 | PANTHER | MYC | 55 | 678 | IPR045084 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro) | |
HCH5g0270 | 683 | MobiDBLite | consensus disorder prediction | 30 | 61 | - | - | |
HCH5g0270 | 683 | Pfam | Helix-loop-helix DNA-binding domain | 503 | 549 | IPR011598 | GO:0046983(InterPro) | |
HCH5g0270 | 683 | MobiDBLite | consensus disorder prediction | 456 | 509 | - | - | |
HCH5g0270 | 683 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 68 | 246 | IPR025610 | - | |
HCH5g0270 | 683 | SMART | finulus | 505 | 554 | IPR011598 | GO:0046983(InterPro) | |
HCH5g0270 | 683 | MobiDBLite | consensus disorder prediction | 257 | 288 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH5g0270 | HCH-Chr5:1595608 | HCH7g1715 | HCH-Chr7:48968235 | 4.80E-60 | dispersed | |
HCH5g0022 | HCH-Chr5:122218 | HCH5g0270 | HCH-Chr5:1595608 | 1.30E-33 | transposed | |
HCH5g0270 | HCH-Chr5:1595608 | HCH6g1113 | HCH-Chr6:45764486 | 1.00E-219 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33581 | PF14215 | bHLH-MYC_N | 6.80E-55 | CL0161 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH5g0270 | K13422 | - | csv:101218165 | 919.457 |