Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0270 ATGACAGACTATCGATTACCGCCGACGATGAATCTCTGGACAGAAGAAAACGCCTCAATGATGGACGCTTTCATGACCACCGATCTAAGTTCCTTCTGGCTCACTCCTCCTCCTCCGCCTCCTCCGCCGCCCTCGCAACAACCTACACCACCTCCGCCTCAATCTCAACCACCGTCCACGGCGGTTTTAAATCAAGAAACTCTTCAACAACGTCTCCAATCCTTAATCGAAAACGCCGATGAAGCTTGGACCTACGCTATCTTCTGGCAATCGTCTTTCGATTACTCTGGCGCCTCCGTATTAGGGTGGGGAGACGGTTATTACAAAGGGGAAGAAGATAAGGCGAAGACGAAAAGCGGTAGCTCAATTGCGGAGCAAGAGCACCGTAAGAAGGTGCTCCGTGAGCTTAATTCTTTGATTTCTGGTTCTCCGTCAACGGAAGATGACGCCGTCGATGAAATCGTTACCGATACCGAGTGGTTTTTTTTGGTTTCGATGACTCAGTCTTTTAATTCCGGTGTCGGATTGCCGGGACTGGCCTTTTTGAATTCGGATCGTGTTTGGGTTTCCGGGTCAGATCGGCTGGAGAATTCGGGTTGTGAGAGGGCTAGGCAAGCTCAGGTTTTCGGGTTGCAGACGATGGTTTGTATACCGTCGGAGAATGGGGTGGTGGAATTGGGATCCACGGAGGTTATTTATCAGAGTTTGGATCTCATGAATAAGGTTAGGGTTTTGTTTAATTTTGATAATAATAGTAATAATAATAATGTGGAAATGGGAAATTGGCCTATTAGTGGTGTTGATGAAGGAGAGAATGACCCTGAGCCTGACCCTTCTTCACTTTGGATTAGTGATCCGTCGAATGATATCGAAATTAAGGATTCTGTTAATAATAGTAATACTGTTGTGTTGCCTCCGGCTTCGGTTCCGAGTCCTACGACTAGTCAGCCGGTTTCGAAATCCATACGGACGGAGAATGTGAAATCCAGTGTTGTGAATGAAACTCCGAGCTCTGTTCCATCGCAGAAGAGCCAGCAGAGTCACTTGCAGTCGAGGCCTACTCATGCTCAGAGTTTTTTTACCAAGGAGTTGAATTTTTCGGAATTTGGGTTTGAGAATAGCGGCTTGAAGGATGGGAATTCGCTTTCGCTTAAGCCGGAGTCAGGTGAGATTCTGAGTTTTGGGGAAAGTAAGAGGAGTTCTTATGGGAATACGAATAATAACTTGCTTTCGGGGAATTCGCAGTTTGTGGTGGATGTTGAGAATAAGAAGAAAAAGTCGCCTAATTCACGTGGTAGTAATGAGGAGGGGATGCTTTCGTTTACATCGGGTGTGATATTACCGTCTTCTGGGGTTGTGAAATCGGGTGGTTGCGTTGGTGATTCCGATCACTCGGACCTTGAAGCTTCGGTGGTTCGTGAGGTGGAGAGTAGTAGAGTGGCGGAGCCGGAGAAGCGGCCTCGTAAAAGAGGTCGGAAGCCAGCGAATGGTAGGGAGGAACCGTTGAATCATGTTGAAGCAGAGAGGCAGCGGAGAGAGAAGCTAAATCAGAGGTTTTATGCTCTTCGAGCTGTGGTTCCAAATGTATCGAAGATGGACAAAGCTTCACTCCTTGGTGATGCAATTTCTTACATTAATGAGCTCAAAGGGAAGCTTCAAGTTACAGAATCAGATAAGGAGGATTTGCAAAAGCAATTGGATTCAGTGAAGAACTTGACGTCTAGTAAAGATTCATGCATTTCAAGCTCAAATCAACCTCCACCAGATCAAGACACGAAAACATCAAATATCCATGCGAGTATAGAAATGGATATCGATGTGAAGATAATCGGTTGGGATGCTATGATTCGAATCCAGTCTAGTAAGAAAAACCATCCTGCTGCAAGGCTAATGGCTGCTTTAGAGGAAATGGACTTGGATATCAACCATGCGAGCATGTCAGTTGTCAACGATCTGATGATACAACAAGCTACTGTCAAGATGGGGAGTCGGTTTTACACTCAGGAGCAGCTAAGGATAGCTCTATCGTCCAAAGTAGGTGGTATCCGATAG 2052 46.1 MTDYRLPPTMNLWTEENASMMDAFMTTDLSSFWLTPPPPPPPPPSQQPTPPPPQSQPPSTAVLNQETLQQRLQSLIENADEAWTYAIFWQSSFDYSGASVLGWGDGYYKGEEDKAKTKSGSSIAEQEHRKKVLRELNSLISGSPSTEDDAVDEIVTDTEWFFLVSMTQSFNSGVGLPGLAFLNSDRVWVSGSDRLENSGCERARQAQVFGLQTMVCIPSENGVVELGSTEVIYQSLDLMNKVRVLFNFDNNSNNNNVEMGNWPISGVDEGENDPEPDPSSLWISDPSNDIEIKDSVNNSNTVVLPPASVPSPTTSQPVSKSIRTENVKSSVVNETPSSVPSQKSQQSHLQSRPTHAQSFFTKELNFSEFGFENSGLKDGNSLSLKPESGEILSFGESKRSSYGNTNNNLLSGNSQFVVDVENKKKKSPNSRGSNEEGMLSFTSGVILPSSGVVKSGGCVGDSDHSDLEASVVREVESSRVAEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKGKLQVTESDKEDLQKQLDSVKNLTSSKDSCISSSNQPPPDQDTKTSNIHASIEMDIDVKIIGWDAMIRIQSSKKNHPAARLMAALEEMDLDINHASMSVVNDLMIQQATVKMGSRFYTQEQLRIALSSKVGGIR 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1595608 1597659 + evm.model.ptg000001l.270 HCH5g0270 544422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0270 683 MobiDBLite consensus disorder prediction 573 596 - -
HCH5g0270 683 Coils Coil 545 572 - -
HCH5g0270 683 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 499 548 IPR011598 GO:0046983(InterPro)
HCH5g0270 683 MobiDBLite consensus disorder prediction 33 58 - -
HCH5g0270 683 CDD bHLH_AtAIB_like 496 570 - -
HCH5g0270 683 MobiDBLite consensus disorder prediction 466 509 - -
HCH5g0270 683 MobiDBLite consensus disorder prediction 301 355 - -
HCH5g0270 683 FunFam Transcription factor bHLH13 492 566 - -
HCH5g0270 683 Gene3D - 498 574 IPR036638 GO:0046983(InterPro)
HCH5g0270 683 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 502 569 IPR036638 GO:0046983(InterPro)
HCH5g0270 683 PANTHER MYC 55 678 IPR045084 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)
HCH5g0270 683 MobiDBLite consensus disorder prediction 30 61 - -
HCH5g0270 683 Pfam Helix-loop-helix DNA-binding domain 503 549 IPR011598 GO:0046983(InterPro)
HCH5g0270 683 MobiDBLite consensus disorder prediction 456 509 - -
HCH5g0270 683 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 68 246 IPR025610 -
HCH5g0270 683 SMART finulus 505 554 IPR011598 GO:0046983(InterPro)
HCH5g0270 683 MobiDBLite consensus disorder prediction 257 288 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0270 HCH-Chr5:1595608 HCH7g1715 HCH-Chr7:48968235 4.80E-60 dispersed
HCH5g0022 HCH-Chr5:122218 HCH5g0270 HCH-Chr5:1595608 1.30E-33 transposed
HCH5g0270 HCH-Chr5:1595608 HCH6g1113 HCH-Chr6:45764486 1.00E-219 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33581 PF14215 bHLH-MYC_N 6.80E-55 CL0161 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0270 K13422 - csv:101218165 919.457