Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0278 ATGGAATCAATAGATTCCCAACGTTCACAATTCTTAGCACAATCAAACATGGCGGCGGGACCCACAACATACCCATCAACCACGGTGGCCAATAACACTTCCTCTATGATGGGTCTCAACAATCAACCCACCCCTCAAATGATGCCTTCTGGAATGAGATTTCAATTAAACTCCATGATCACCCCTACATCATCCGGGCCTTTTGATTCTCTAAATGCCGGTCCTTTCGTCGACGGATCGCAATCGTCGATGAGTTTCGGCATTGATTCGGTTAAGAAGAAGAGAGGCAGACCAAGAAAGTATACTCCTGACGGCAACATTGCTCTGGGTTTGACACCGGGGAATGCTGTTAAATCTTCTGGTGGCGGTGATGGGGATGTAATCGAACCGGTGAAGAAGACGAGAGGGAGACCGCCCGGTTCGGGGAAGAAACAAATGAATGCTTTGGGTGCAGGATGTATTGGTTTTATTCCTCATGTGGTAATGGTGCAACCTGGAGAGGACATAGCATCCAAAATTTTGTCCGTCTCACAACAAGGACCGCGAAGTATTTTTATTCTCTCTGCATGTGGTTCTATCAGTCACGCTACCCTTCGACAACAAACTACTTCGGGTAGTACAGTGACGTATGAGGGTGAATATGAAATCATCTCTCTAACCGGTTCTCTTTTGCTTTCGGATAATAACGGTACTCTAAATCGAACTGGTGGTTTAAGTGTGTCCCTGGCTGGGCCAGAAGGACGAGTTATTGGTGGTGTAGTTGCAGGAATGCTAATAGCAGCCTCTCAAGTACAGATCATCGTGGGTAGTTTTACTGGGGATGAGAAAAAAAACAACTCAAGTGGATCTGGATCTGGTGTGCCAACCCAAATGACCAACTTTGGTAGATCGGGTGCGGGTGCTGTCACAAGCCCACCTTCAATAGGGGCGTCAAGTGATTCGTCAGCCGAGAACGGCGACAGCTCTCTGAATAGGCATCCTGGGATAATGAACAACCACAATATGCAGCAGATGTACAATTTATGGGCTAGCCAAACACCGCAATGA 1047 47.09 MESIDSQRSQFLAQSNMAAGPTTYPSTTVANNTSSMMGLNNQPTPQMMPSGMRFQLNSMITPTSSGPFDSLNAGPFVDGSQSSMSFGIDSVKKKRGRPRKYTPDGNIALGLTPGNAVKSSGGGDGDVIEPVKKTRGRPPGSGKKQMNALGAGCIGFIPHVVMVQPGEDIASKILSVSQQGPRSIFILSACGSISHATLRQQTTSGSTVTYEGEYEIISLTGSLLLSDNNGTLNRTGGLSVSLAGPEGRVIGGVVAGMLIAASQVQIIVGSFTGDEKKNNSSGSGSGVPTQMTNFGRSGAGAVTSPPSIGASSDSSAENGDSSLNRHPGIMNNHNMQQMYNLWASQTPQ 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1662524 1666695 + evm.model.ptg000001l.278 HCH5g0278 544430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0278 348 ProSiteProfiles PPC domain profile profile. 152 293 IPR005175 -
HCH5g0278 348 MobiDBLite consensus disorder prediction 274 331 - -
HCH5g0278 348 Gene3D - 158 284 - -
HCH5g0278 348 MobiDBLite consensus disorder prediction 1 40 - -
HCH5g0278 348 MobiDBLite consensus disorder prediction 90 144 - -
HCH5g0278 348 SMART AT_hook_2 132 144 IPR017956 GO:0003677(InterPro)
HCH5g0278 348 SMART AT_hook_2 92 104 IPR017956 GO:0003677(InterPro)
HCH5g0278 348 SUPERFAMILY AF0104/ALDC/Ptd012-like 158 273 - -
HCH5g0278 348 Pfam Plants and Prokaryotes Conserved (PCC) domain 158 273 IPR005175 -
HCH5g0278 348 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 320 IPR039605 GO:0003680(InterPro)
HCH5g0278 348 CDD DUF296 158 271 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0278 HCH-Chr5:1662524 HCH6g1108 HCH-Chr6:45683439 7.50E-70 dispersed
HCH5g0278 HCH-Chr5:1662524 HCH6g1107 HCH-Chr6:45680408 4.00E-15 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0278 - - - 0.0