Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0280 ATGGCTGGTCTGGATTTAGGCAATCACTATATTCACCAACTTCAAAGAACTGATTTCAACCTTCATCACAGCCTTCACCACCACCAAAACCAACAACCTGATTCTCAATCCCACCATGATGATGAATCCCACCAAGCTTTGGAGTTTGTCGGTGGAGATACCGTGCACGGTGGCGATATGTCTGCATCTCGTCGGCCTCGGGGCCGTCCTCCCGGTTCCAAAAACAAGTCAAGGCCACCAGTTATCATAACCCGGGAAAGCGCCAATACCCTAAGAGCTCATATTCTTGAGGTCAGTGGCGGCTGCGATGTTTTCGATTGCATCGCCGCCTTCGCTCGCCGCCGCCAACGTGGGATCTGCATCTTAAGCGGTACGGGTACCGTTACAAATGTCAGCTTGCGGCAGCCTACCGCGACCGGTGCCGTGTTAACCCTACATGGGAGGTTTGAGATATTATCACTAACTGGATCGTTTTTGCCGCCACCGGCTCCACCGGGTGCCACAAGCCTGACTATATACTTGGCTGGCGGCCAAGGGCAAGTGGTTGGAGGCAACGTGGTTGGAGAGTTGGTGGCGGCTGGACCGGTCACGGTCGTCGCCGCGTCTTTTACTAATGTAGCTTATGAAAGACTACCACTGGAGGATCAAGATCAGGAGCAACTTCAGATGCAGCAGCAGCAACCACCGGCATCCCAAGGTGGTGGCGGTTCTAGTAGCAGCAGCGGTGGTGGCGGTGGGGGAAATAACCCATTTCCGGATCCATCTTCCGGTCTTCCTTTCCTCAATTTGCCGATTAATATGCAGAATCATGTTCAATTACCATTCTGA 828 52.9 MAGLDLGNHYIHQLQRTDFNLHHSLHHHQNQQPDSQSHHDDESHQALEFVGGDTVHGGDMSASRRPRGRPPGSKNKSRPPVIITRESANTLRAHILEVSGGCDVFDCIAAFARRRQRGICILSGTGTVTNVSLRQPTATGAVLTLHGRFEILSLTGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVVGELVAAGPVTVVAASFTNVAYERLPLEDQDQEQLQMQQQQPPASQGGGGSSSSSGGGGGGNNPFPDPSSGLPFLNLPINMQNHVQLPF 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1673266 1674093 - evm.model.ptg000001l.280 HCH5g0280 544432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0280 275 Gene3D - 91 229 - -
HCH5g0280 275 Pfam Plants and Prokaryotes Conserved (PCC) domain 92 205 IPR005175 -
HCH5g0280 275 SUPERFAMILY AF0104/ALDC/Ptd012-like 88 222 - -
HCH5g0280 275 MobiDBLite consensus disorder prediction 51 82 - -
HCH5g0280 275 PIRSF ESCAROLA 9 272 IPR014476 GO:0003680(InterPro)
HCH5g0280 275 MobiDBLite consensus disorder prediction 217 246 - -
HCH5g0280 275 CDD DUF296 92 175 IPR005175 -
HCH5g0280 275 ProSiteProfiles PPC domain profile profile. 88 224 IPR005175 -
HCH5g0280 275 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 31 267 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH5g0280 275 MobiDBLite consensus disorder prediction 217 260 - -
HCH5g0280 275 FunFam AT-hook motif nuclear-localized protein 91 219 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0280 HCH-Chr5:1673266 HCH6g1107 HCH-Chr6:45680408 2.00E-78 dispersed
HCH5g0280 HCH-Chr5:1673266 HCH6g1352 HCH-Chr6:47549431 2.80E-72 wgd
HCH5g0280 HCH-Chr5:1673266 HCH7g1504 HCH-Chr7:47619708 2.60E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0280 - - - 0.0