Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0300 ATGGAAATTGTGAAGAGAGTACAGGGTCTGGTATTTTCTGTAATATTTGGTGCGATTTTTCATGGAAGTGAGAGTTTGAGAGATCATGGGCCTTTGTTCCTTAACTATTACAAAGAAACATGTCCATTAGTGGAAGATATAGTTAAACGACAGGTTGAGATTGCTGTTCTCAAAGACCCTCGTATGGCTGCTTCACTCCTTCGCTTGCATTTCCATGATTGCTTTGTTATGGGGTGTGATGCATCAGTTCTTCTGGACAGCAATGAAGAGATAGTGAGTGAAAAGCTGGCAACTCCAAACTTGAACTCTCTAAGAGGCTTCCATGTCATTGATGAAATCAAATATATATTGGAAGAAGCTTGTCCTTATACTGTTTCTTGTGCTGATATTTTAACCTTAGCTGCTCGTGATGCTGTTTTCCTGAGAGGGGGGCCTGGATGGGAAGTGTTGCTTGGGAGGAAAGACTCCTTGGAAGCAAGCTTTGATGGAGCCAACAAATATATCCCTTCTCCTAATTCTTCTCTTGAGACCCTAATTGACAATTTTCAACAACAGGGCCTTGATGTTGGAGACTTGGTTGCTCTATCAGGTAGTCACACCATTGGAAAAGCAAGATGCTTGAGCTTCAGGCAGAGGATATACCAAATGAAGGAGGAAGAGAAATATGACAGATACAAGAGACAGACCACATATAGGAGGATTCTGAGGTCCATGTGCCCAGAATCAGGGCAGGAACAGAAGATTGCACCACTAGATTTAGAGACACCGGCAAGGTTTGACAATCATTATTTCCTCAACATTCTTAAAGGGAAAGGGCTGTTGGGTTCTGATAATGTGTTGATAAGTGAAGACCATGTGGGTGAGATAAGGAAACAGGTGTGGAGTTATGCAGCTGATCAAGACCTCTTCTTTGCTTCCTTTGTCAACTCCATTGTCAAGATGGGGAATATTAATGTACTCACTGCCCATGAAGGTCAAGTTAGAAGGAATTGCAGGTTTATCAATCACTAG 1011 42.04 MEIVKRVQGLVFSVIFGAIFHGSESLRDHGPLFLNYYKETCPLVEDIVKRQVEIAVLKDPRMAASLLRLHFHDCFVMGCDASVLLDSNEEIVSEKLATPNLNSLRGFHVIDEIKYILEEACPYTVSCADILTLAARDAVFLRGGPGWEVLLGRKDSLEASFDGANKYIPSPNSSLETLIDNFQQQGLDVGDLVALSGSHTIGKARCLSFRQRIYQMKEEEKYDRYKRQTTYRRILRSMCPESGQEQKIAPLDLETPARFDNHYFLNILKGKGLLGSDNVLISEDHVGEIRKQVWSYAADQDLFFASFVNSIVKMGNINVLTAHEGQVRRNCRFINH 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1873911 1875332 - evm.model.ptg000001l.300 HCH5g0300 544452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0300 336 Pfam Peroxidase 48 299 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0300 336 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0300 336 PRINTS Haem peroxidase superfamily signature 252 267 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0300 336 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0300 336 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0300 336 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0300 336 CDD secretory_peroxidase 32 334 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH5g0300 336 SUPERFAMILY Heme-dependent peroxidases 32 335 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0300 336 FunFam Peroxidase 169 314 - -
HCH5g0300 336 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0300 336 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0300 336 PRINTS Plant peroxidase signature 266 283 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0300 336 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0300 336 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0300 336 PRINTS Plant peroxidase signature 309 322 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0300 336 PRINTS Plant peroxidase signature 190 202 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0300 336 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0300 336 PRINTS Plant peroxidase signature 250 265 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0300 336 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601(InterPro)
HCH5g0300 336 Gene3D - 36 335 - -
HCH5g0300 336 ProSiteProfiles Plant heme peroxidase family profile. 31 335 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0300 336 PANTHER PEROXIDASE 72-RELATED 21 334 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH5g0300 336 ProSitePatterns Peroxidases proximal heme-ligand signature. 191 201 IPR019793 -
HCH5g0300 336 FunFam Peroxidase 35 177 - -
HCH5g0300 336 Gene3D Peroxidase, domain 2 169 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0610 HCH-Chr14:34853882 HCH5g0300 HCH-Chr5:1873911 4.90E-87 dispersed
HCH1g0841 HCH-Chr1:57003576 HCH5g0300 HCH-Chr5:1873911 1.20E-77 dispersed
HCH4g0752 HCH-Chr4:4843382 HCH5g0300 HCH-Chr5:1873911 3.10E-87 dispersed
HCH5g0300 HCH-Chr5:1873911 HCH6g1760 HCH-Chr6:50057948 9.50E-78 dispersed
HCH5g0300 HCH-Chr5:1873911 HCH13g1387 HCH-Chr13:41797116 4.50E-88 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0300 K00430 - csv:116402797 510.375