Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0327 ATGGAACTGTCAGTTAAATGTGGCTATTGCTGCCTCCTCTTTGTGCTGATCTTGCCTGTGCTGTGTTTCTCTCAAGACACATTTGTGTACTCAAGAGCCACATATTATGGCAGCCCTGATTGCTATGGGACCCCATCTGGAGCTTGTGGGTTTGGTGAATTTGGAAGGACTGTGAATGATGGCAATGTGGGTGCGGTTTCAAGGCTCTATAGGAATGGTTCTGGCTGCGGTGCCTGCTATCAGGTAAGGTGCACAAATCCAAGCTATTGCAGTGAAGGGGGAGCGAATGTGGTGGTGACTGACCATGGTGAAGGAGATTACACAGACTTTATATTGAGTCCACGTGCCTATGCAAAATTGGCACATCCAAACACGGCCTTACAATTATTCTCTTATGGTGTTGTTGACGTAGAATTCAGAAGGATTTCTTGCCAATACCCTTATTACAACACTCTCAAATTTAAGGTCCATGAGCACAGTAGATACCCTGATTATTTGGCCATTGTCATCATCTATGTAGCTGGCCAAAATGACATCACAGCCGTTGAATTGTGGCAGGAGGATTTCAAAGAATGGAAAGGGATGAGAAGAAGCCATGGAGCAGTTTGGGACATGGCAAACCCACCAAAGTATGACATAAAATTGAGGTTCCAAGTGAGTGGAAATGGAGGGTATCCAAGATGGGTGGTGGCAAACAATGCCATCCCAAACTATTGGAAGGCTGGAATTGCTTATGACACAGATATTCACCTCAACTAA 759 44.93 MELSVKCGYCCLLFVLILPVLCFSQDTFVYSRATYYGSPDCYGTPSGACGFGEFGRTVNDGNVGAVSRLYRNGSGCGACYQVRCTNPSYCSEGGANVVVTDHGEGDYTDFILSPRAYAKLAHPNTALQLFSYGVVDVEFRRISCQYPYYNTLKFKVHEHSRYPDYLAIVIIYVAGQNDITAVELWQEDFKEWKGMRRSHGAVWDMANPPKYDIKLRFQVSGNGGYPRWVVANNAIPNYWKAGIAYDTDIHLN 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2149917 2151788 + evm.model.ptg000001l.327 HCH5g0327 544479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0327 252 Pfam Lytic transglycolase 67 138 IPR009009 -
HCH5g0327 252 Pfam Expansin C-terminal domain 153 236 IPR007117 -
HCH5g0327 252 PANTHER EXPANSIN-B3 10 250 - -
HCH5g0327 252 Gene3D - 21 144 IPR036908 -
HCH5g0327 252 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576(InterPro)
HCH5g0327 252 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576(InterPro)
HCH5g0327 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576(InterPro)
HCH5g0327 252 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576(InterPro)
HCH5g0327 252 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
HCH5g0327 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 149 IPR007112 -
HCH5g0327 252 SUPERFAMILY Barwin-like endoglucanases 14 147 IPR036908 -
HCH5g0327 252 SUPERFAMILY PHL pollen allergen 151 246 IPR036749 -
HCH5g0327 252 Gene3D - 145 248 IPR036749 -
HCH5g0327 252 CDD DPBB_EXLB_N 29 144 - -
HCH5g0327 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 247 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0307 HCH-Chr5:1907084 HCH5g0327 HCH-Chr5:2149917 7.50E-59 dispersed
HCH5g0327 HCH-Chr5:2149917 HCH7g0424 HCH-Chr7:3074550 3.30E-43 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0327 - - - 0.0