Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH5g0328 ATGGGAAAGCAAGGACCTTGCTGTCACTGTGGAGTTACTAGCACCCCTCTTTGGCGCAATGGACCTCCTGATAAACCTGTATTGTGCAATGCGTGTGGATCTCGATGGAGAACAAAAGGAACACTTGTAAACTATACCCCTTTGCATGCTCGGGCAGATCCTGATGATTATGAAGATCACAGGGTTTTCCGAGTGAAGAGCATATCAATAAATAAAAACAAAGAAGTGAAACTCTTGAAAAGAAAGCTGCAACATGTAGATGGGGCAATTGGGGGGTTTATTCCTGATCAAGGTCAGGGTTTCCTTAGAGTGATGGATGAAGACACAAGCAATAGATCAAGTTCTGGATCAGCCATATCTAATTCTGAGAGCTGTGCCCATTTCAGCAGTGCAGATGCAAGTGATTTGACAGGTCCAGCTCAGTCAATAGTATGGGAGACGATGGTGCCTTCCAAGAAGAGGACCTGTGTGAGTCGTTCAAAGCCATCTCCAGTTGAAAAACTAACTAAAGATCTATGTACTATTTTATATGAGCAGAAATCTTCCTGTTTTTCTGGATCTTCTGAGGATGATCTTCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGCATTCTCATTAGGCATCCAAGCTCAATAGCTCGAGAAGAAGAATCTGAAGCAAGTTCTCTTTCAGTTGATAACAAGCAATACTCGGTAAATGAGGTCTATTCCCAATTCGCAACTGTTCGTATGCATAGTGAAAACAAGGGTATGAATTTCCCCCCATCTAGGATTGGGAAGATGAAAAATCCTTCTGGATCAGGGCTACAAGAAGAACAGATTAAAAGGGACAACTCTCATCATGAAAATTTACAAATTCTGGGAAACCACAACTCACCCTTGTGTGATATGGATATAAATGATGTCGTAAACTTTGAAGAGTTTATGAGACAATTGACTAATGAAGAGCAACGACGATTAATGAAGTATCTCCCATGGGTTGATACTGCTGAACTTCCGGAGACCCTCGAGAGCATGTTTGATAGCCCTTATTTCAAGGAAAACTTGACTTCCTTCCAGCAATTGCTTAGAGATGGCGTTTTTGACTTCTCCTTCCCAGGGATAAAAACTGAAGACTGCAAGACTCTGAAAGGACTCGTCTTGTATAATTTTTCGAAATCCAATTGGGTTGAACGCCATCATCTATTGAAGAAATGTAAAAATGGTAGCAAAGTATCTTCTATTTCCAGTCCCAATGCCTCAGCATCAAGTAACTTCATGAAATTTAAACGATCGCGTGACAGCTACAATCAAAATATTTCAGAAGCAAAGACTATCTTGAAGAGTCCCAAAAAGTTGGTGATGAAGGAGAATAAGGATCCTGGAGACAGTGATGGTTCTTGCTTTAGTCCTAGGAGCTTATTTGCTTTGCCTCCTGATGGAAGTTCCCTCATGCTTGAATCTTTACATTGTGTTGGAGAAAGTTCAGATCAAGATCTATTGCTGGACGTGCGGTCCAACAGTTCCTTCCCACAGGCTGAGCTTCTTCACCCGTCCACTAGTGCTGGTGCTCGGCAGGCTAGCACATGCAGTAGCTCAGTTCACCCATATCTTGGCCATCACTAA 1623 42.02 MGKQGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLVNYTPLHARADPDDYEDHRVFRVKSISINKNKEVKLLKRKLQHVDGAIGGFIPDQGQGFLRVMDEDTSNRSSSGSAISNSESCAHFSSADASDLTGPAQSIVWETMVPSKKRTCVSRSKPSPVEKLTKDLCTILYEQKSSCFSGSSEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSLSVDNKQYSVNEVYSQFATVRMHSENKGMNFPPSRIGKMKNPSGSGLQEEQIKRDNSHHENLQILGNHNSPLCDMDINDVVNFEEFMRQLTNEEQRRLMKYLPWVDTAELPETLESMFDSPYFKENLTSFQQLLRDGVFDFSFPGIKTEDCKTLKGLVLYNFSKSNWVERHHLLKKCKNGSKVSSISSPNASASSNFMKFKRSRDSYNQNISEAKTILKSPKKLVMKENKDPGDSDGSCFSPRSLFALPPDGSSLMLESLHCVGESSDQDLLLDVRSNSSFPQAELLHPSTSAGARQASTCSSSVHPYLGHH 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2156039 2161470 - evm.model.ptg000001l.328 HCH5g0328 544480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH5g0328 540 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g0328 540 FunFam GATA transcription factor 27 3 85 - -
HCH5g0328 540 PANTHER OSJNBB0038F03.10 PROTEIN 1 371 IPR044589 -
HCH5g0328 540 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g0328 540 MobiDBLite consensus disorder prediction 516 534 - -
HCH5g0328 540 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
HCH5g0328 540 Gene3D - 3 82 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
HCH5g0328 540 Pfam Asx homology domain 285 368 IPR028020 -
HCH5g0328 540 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g0328 540 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH5g0328 540 MobiDBLite consensus disorder prediction 253 276 - -
HCH5g0328 540 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 412 IPR044867 -
HCH5g0328 540 Gene3D - 292 379 IPR038108 -
HCH5g0328 540 MobiDBLite consensus disorder prediction 516 540 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0328 HCH-Chr5:2156039 HCH6g1060 HCH-Chr6:45259612 9.20E-200 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33587 PF13919 ASXH 9.80E-08 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH5g0328 - - - 0.0